Detailed information NTG0949813

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: WE348_RS14585
• Genome accession: NZ_CP147978
• Coordinates: 3374744..3375637 (+)
• Length: 297 a.a.
• NCBI ID: WP_338852064.1
• Uniprot ID: -
• Organism: Alteromonas macleodii strain KD01
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3369744..3380637

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WE348_RS14560 (WE348_14560)	ampD	3370269..3370808 (-)	540	WP_069944747.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
WE348_RS14565 (WE348_14565)	-	3370992..3371510 (+)	519	WP_014977216.1	TIGR02281 family clan AA aspartic protease	-
WE348_RS14570 (WE348_14570)	nadC	3371543..3372397 (+)	855	WP_131138172.1	carboxylating nicotinate-nucleotide diphosphorylase	-
WE348_RS14575 (WE348_14575)	pilA2	3372967..3373392 (+)	426	WP_338852060.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
WE348_RS14580 (WE348_14580)	pilC	3373483..3374691 (+)	1209	WP_338852062.1	type II secretion system F family protein	Machinery gene
WE348_RS14585 (WE348_14585)	pilD	3374744..3375637 (+)	894	WP_338852064.1	A24 family peptidase	Machinery gene
WE348_RS14590 (WE348_14590)	coaE	3375656..3376267 (+)	612	WP_283625637.1	dephospho-CoA kinase	-
WE348_RS14595 (WE348_14595)	zapD	3376511..3377263 (+)	753	WP_039227984.1	cell division protein ZapD	-
WE348_RS14600 (WE348_14600)	yacG	3377397..3377624 (+)	228	WP_014950407.1	DNA gyrase inhibitor YacG	-
WE348_RS14605 (WE348_14605)	-	3377845..3378717 (+)	873	WP_239300629.1	aspartoacylase	-
WE348_RS14610 (WE348_14610)	-	3378805..3380094 (-)	1290	WP_338852068.1	methyl-accepting chemotaxis protein	-
WE348_RS14615 (WE348_14615)	-	3380104..3380472 (-)	369	WP_014950410.1	response regulator	-

Sequence

Protein

• Length: 297 a.a.
• Molecular weight: 32984.04 Da
• Isoelectric Point: 6.6904

>NTDB_id=949813 WE348_RS14585 WP_338852064.1 3374744..3375637(+) (pilD) [Alteromonas macleodii strain KD01]
MDAIITLSQLYPAVFYSLVFFVSLMVGSFLNVVIYRLPIMMERSWQQEYQSYFSEGEPTPHDKNSSAKEEVFNLVKPDST
CPSCGHKIRAWENVPVISYLFLKGKCAKCKVGISVRYPLVELFTALACTFAAYQFGVTSQALWAVLFTYILVALLFIDLD
KMLLPDQLTLPLLWLGLLLSTQHIFVDTTDAIIGAAAGYLSLWSVYWLFKLATGKEGMGYGDFKLLAALGAYTGWQGLPI
IILLSSFVGAIAGILIMVIQNKGKSLAIPFGPYLAVAGWLTLLFKDAIITTYLDYVL

Nucleotide

• Length: 894 bp

>NTDB_id=949813 WE348_RS14585 WP_338852064.1 3374744..3375637(+) (pilD) [Alteromonas macleodii strain KD01]
ATGGACGCGATAATTACGCTTAGTCAGCTTTACCCTGCTGTATTCTATTCCCTAGTCTTTTTTGTAAGTTTAATGGTTGG
CAGTTTCTTGAACGTGGTGATTTACCGCTTGCCTATTATGATGGAACGCAGCTGGCAGCAAGAGTACCAAAGCTATTTTA
GCGAGGGTGAGCCGACACCTCACGATAAAAACTCATCAGCGAAAGAAGAAGTATTTAACCTTGTAAAACCAGACAGCACA
TGCCCTAGCTGCGGCCACAAGATTCGCGCATGGGAAAATGTTCCTGTTATTAGCTACCTGTTCCTTAAAGGTAAATGCGC
TAAATGCAAAGTTGGAATATCAGTTCGATACCCGCTGGTTGAATTGTTTACTGCTTTAGCCTGTACGTTTGCGGCCTATC
AATTTGGTGTCACATCGCAAGCACTATGGGCCGTATTGTTTACCTACATACTCGTTGCTCTGCTGTTTATTGACTTAGAT
AAGATGCTATTACCTGACCAGTTGACACTGCCTCTACTGTGGTTGGGATTACTGTTGAGCACGCAACACATTTTTGTAGA
CACCACCGACGCTATTATTGGCGCAGCGGCGGGTTATTTAAGTTTATGGTCTGTGTATTGGCTATTTAAACTTGCCACTG
GCAAAGAAGGCATGGGCTATGGCGATTTCAAGCTGCTCGCCGCACTTGGCGCTTATACGGGCTGGCAAGGTTTGCCCATT
ATTATCTTGCTCTCTTCGTTTGTTGGTGCAATTGCAGGCATACTCATAATGGTGATTCAAAACAAAGGTAAGTCGCTGGC
AATTCCTTTTGGTCCCTATCTCGCAGTGGCGGGTTGGCTGACACTGCTTTTTAAAGATGCCATTATTACCACCTATCTTG
ATTACGTACTTTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-135)

• Type IV leader peptidase family (Peptidase_A24) (146-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.088	95.96	0.529
pilD	Vibrio campbellii strain DS40M4	53.103	97.643	0.519
pilD	Acinetobacter baumannii D1279779	50.179	93.939	0.471
pilD	Acinetobacter nosocomialis M2	49.821	93.939	0.468
pilD	Neisseria gonorrhoeae MS11	47.191	89.899	0.424