Detailed information NTG0949016

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACG3JK_RS03810
• Genome accession: NZ_CP171738
• Coordinates: 775162..776271 (-)
• Length: 369 a.a.
• NCBI ID: WP_003105447.1
• Uniprot ID: A0ABN0ITI9
• Organism: Streptococcus parauberis strain DB-M23
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 770162..781271

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACG3JK_RS03785 (ACG3JK_03785)	-	770728..771531 (-)	804	WP_003103004.1	ABC transporter permease	-
ACG3JK_RS03790 (ACG3JK_03790)	-	771535..772467 (-)	933	WP_003105744.1	glycosyltransferase family 2 protein	-
ACG3JK_RS03795 (ACG3JK_03795)	cps2T	772457..773611 (-)	1155	WP_013793811.1	beta 1-4 rhamnosyltransferase Cps2T	-
ACG3JK_RS03800 (ACG3JK_03800)	rfbD	773727..774578 (-)	852	WP_003103693.1	dTDP-4-dehydrorhamnose reductase	-
ACG3JK_RS03805 (ACG3JK_03805)	-	774670..775008 (-)	339	WP_013793810.1	metal-sulfur cluster assembly factor	-
ACG3JK_RS03810 (ACG3JK_03810)	rpoS	775162..776271 (-)	1110	WP_003105447.1	RNA polymerase sigma factor RpoD	Regulator
ACG3JK_RS03815 (ACG3JK_03815)	dnaG	776280..778091 (-)	1812	WP_003106531.1	DNA primase	-
ACG3JK_RS03820 (ACG3JK_03820)	mscL	778218..778598 (+)	381	WP_003104850.1	large conductance mechanosensitive channel protein MscL	-
ACG3JK_RS03825 (ACG3JK_03825)	rpsU	778706..778882 (-)	177	WP_000048058.1	30S ribosomal protein S21	-
ACG3JK_RS03830 (ACG3JK_03830)	-	779010..779822 (-)	813	WP_003104103.1	transporter substrate-binding domain-containing protein	-
ACG3JK_RS03835 (ACG3JK_03835)	-	779837..780967 (-)	1131	WP_013793808.1	aminotransferase	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42201.87 Da
• Isoelectric Point: 4.4893

>NTDB_id=949016 ACG3JK_RS03810 WP_003105447.1 775162..776271(-) (rpoS) [Streptococcus parauberis strain DB-M23]
MAKENDITTFNVQVADFIRNHKKEGSAVDDEITEKLVIPFVLDADQIDDLLERLTDGGISITDKEGNPSSKYVVEEPKPE
ELTDEQLIGSNSAKVNDPVRMYLKEIGVVPLLTGEEEKELAVAVDEGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLDL
IQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIA
ERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRFG
LDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLRDFIED

Nucleotide

• Length: 1110 bp

>NTDB_id=949016 ACG3JK_RS03810 WP_003105447.1 775162..776271(-) (rpoS) [Streptococcus parauberis strain DB-M23]
ATGGCCAAAGAAAACGATATTACAACTTTTAACGTTCAAGTTGCAGATTTTATTCGTAATCATAAAAAAGAAGGATCTGC
AGTTGATGATGAAATTACAGAAAAATTAGTTATCCCATTCGTTTTAGATGCTGACCAAATTGATGATTTATTAGAACGCC
TGACTGATGGCGGTATTTCTATCACAGATAAAGAAGGAAATCCTTCATCTAAATATGTTGTTGAAGAACCAAAACCTGAA
GAACTTACAGATGAGCAATTAATCGGAAGTAATTCAGCTAAGGTAAATGATCCAGTTCGTATGTACTTGAAAGAAATTGG
GGTTGTTCCACTATTAACTGGTGAAGAAGAAAAAGAATTAGCAGTAGCTGTTGATGAAGGCGATTTAGAAGCTAAACAAC
GTCTGGCTGAAGCTAATTTACGTCTTGTAGTATCTATTGCTAAACGCTATGTTGGTCGTGGCATGCAATTTTTGGATTTA
ATTCAAGAAGGTAATATGGGTCTTATGAAAGCAGTTGATAAGTTTGACTATTCTAAAGGTTTTAAATTTTCAACTTATGC
AACATGGTGGATTCGCCAAGCAATTACACGTGCCATCGCCGACCAAGCACGTACTATTCGTATTCCAGTACATATGGTCG
AAACGATTAATAAATTAGTTAGAGAACAACGTAATTTGTTACAAGAATTAGGACAAGACCCAACGCCAGAACAAATTGCT
GAGCGCATGGAAATGACACCTGATAAAGTACGTGAAATTCTAAAAATTGCTCAAGAACCTGTTTCACTTGAAACTCCTAT
TGGTGAAGAAGATGATAGCCATCTTGGTGATTTTATTGAAGATGAAGTGATTGAAAATCCAGTAGATTATACAACACGTG
TTGTTTTACGTGAACAATTAGATGAAGTTTTAGATACATTAACTGACCGTGAAGAAAATGTATTGAGACTACGTTTTGGT
CTTGATGATGGGAAAATGCGTACTTTAGAAGATGTTGGTAAAGTTTTCAACGTTACAAGAGAGCGTATCCGTCAAATTGA
AGCCAAAGCACTCCGCAAACTCCGCCACCCAAGCAGAAGCAAACAATTAAGAGACTTTATTGAGGACTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (135-204)

• Sigma-70 factor, region 1.1 (Sigma70_r1_1) (13-84)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (97-129)

• Sigma-70, region 4 (Sigma70_r4) (303-356)

• Sigma-70 region 3 (Sigma70_r3) (214-290)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	45.578	79.675	0.363