Detailed information NTG0949015

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: WDW95_RS10480
• Genome accession: NZ_CP147857
• Coordinates: 2095327..2096394 (-)
• Length: 355 a.a.
• NCBI ID: WP_368651553.1
• Uniprot ID: -
• Organism: Lactococcus raffinolactis strain APC3967
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2090327..2101394

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WDW95_RS10435	-	2090524..2091294 (-)	771	WP_244165990.1	metal ABC transporter ATP-binding protein	-
WDW95_RS10440	-	2091294..2091743 (-)	450	WP_096039675.1	zinc-dependent MarR family transcriptional regulator	-
WDW95_RS10445	-	2091819..2092667 (-)	849	WP_167838309.1	aminotransferase class IV	-
WDW95_RS10450	ispE	2092751..2093602 (-)	852	WP_061774322.1	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	-
WDW95_RS10455	comGG	2093607..2093891 (-)	285	WP_368651551.1	competence type IV pilus minor pilin ComGG	-
WDW95_RS10460	comGF	2093903..2094346 (-)	444	WP_244165991.1	competence type IV pilus minor pilin ComGF	-
WDW95_RS10465	comGE	2094321..2094626 (-)	306	WP_082785376.1	competence type IV pilus minor pilin ComGE	-
WDW95_RS10470	comGD	2094598..2095083 (-)	486	WP_368651552.1	competence type IV pilus minor pilin ComGD	-
WDW95_RS10475	comYC	2094998..2095318 (-)	321	WP_061774318.1	competence type IV pilus major pilin ComGC	Machinery gene
WDW95_RS10480	comYB	2095327..2096394 (-)	1068	WP_368651553.1	competence type IV pilus assembly protein ComGB	Machinery gene
WDW95_RS10485	comGA/cglA/cilD	2096276..2097217 (-)	942	WP_061774317.1	competence type IV pilus ATPase ComGA	Machinery gene
WDW95_RS10490	-	2097280..2099124 (-)	1845	WP_096039681.1	acyltransferase family protein	-
WDW95_RS10495	-	2099121..2099483 (-)	363	WP_061774315.1	hypothetical protein	-

Sequence

Protein

• Length: 355 a.a.
• Molecular weight: 40663.32 Da
• Isoelectric Point: 10.0967

>NTDB_id=949015 WDW95_RS10480 WP_368651553.1 2095327..2096394(-) (comYB) [Lactococcus raffinolactis strain APC3967]
MLKKHSKGMPTTSGMPKLKNWLQKDISHLIRRQPKRLAIKQQVKLMQLMNNLFLSGFHLAEIVNFLSRSKLVEERFVATM
RDGLSNGQNLSQILNDLRFSNLVVTQVALADYHGDTQQTLTLIIDNLTKIQKVRKKLVAVSTYPIILLTFLIIIVLGLKT
YLLPQVETDSFAGTVINALPLIFIGLSLVLTFFALGLIRYFKSTSPLANVQWLGRLPLIRSYLKLYLTAFYAREWGNLVK
QGLEMMTSQQNLLFREIGQDIRRAMQVGEEFHDKIKQYSFFTPELALIIEYGEMKGKLGDELLIYSDESWTKFFEKVESA
MNVIQPLVFLFVALMIVLIYAAMLLPIYAQMDLGM

Nucleotide

• Length: 1068 bp

>NTDB_id=949015 WDW95_RS10480 WP_368651553.1 2095327..2096394(-) (comYB) [Lactococcus raffinolactis strain APC3967]
GTGCTGAAAAAGCATTCGAAAGGCATGCCAACGACAAGTGGCATGCCAAAATTGAAAAATTGGTTACAGAAGGACATCTC
ACACCTGATCAGGCGACAGCCGAAAAGGTTAGCGATTAAGCAACAAGTGAAGCTGATGCAGTTGATGAATAACCTCTTTT
TGAGTGGTTTTCATTTAGCAGAAATTGTTAATTTTTTGAGCCGCTCGAAGCTAGTGGAGGAGAGATTTGTTGCGACTATG
CGAGATGGCTTATCGAATGGTCAAAATCTCTCACAAATCTTAAATGATTTACGTTTTTCAAACTTAGTCGTCACACAAGT
TGCTTTAGCAGATTACCATGGTGATACCCAGCAAACACTGACATTAATAATAGATAATTTAACAAAAATTCAGAAGGTTC
GAAAAAAATTGGTGGCTGTATCGACCTATCCCATCATCTTGTTAACTTTTCTAATCATCATCGTACTGGGATTAAAAACC
TATTTGCTACCCCAAGTTGAAACGGATAGTTTTGCGGGCACTGTGATCAATGCCTTACCTTTGATTTTTATCGGGTTGAG
CCTCGTGTTAACATTTTTTGCGTTAGGACTGATTCGGTATTTCAAATCAACATCACCATTGGCTAATGTCCAATGGTTAG
GTCGTCTTCCCTTGATCCGATCGTACTTAAAGCTTTATCTGACAGCGTTTTATGCGCGAGAGTGGGGAAACTTGGTTAAG
CAAGGTTTGGAGATGATGACCAGCCAACAGAATCTACTTTTTCGTGAAATTGGTCAAGATATAAGGCGGGCTATGCAAGT
GGGGGAAGAATTTCACGACAAGATTAAGCAATACAGCTTTTTCACACCGGAGTTGGCCCTCATCATCGAATATGGTGAAA
TGAAGGGCAAATTAGGTGATGAATTACTCATCTATTCGGATGAATCCTGGACAAAATTTTTTGAAAAGGTTGAAAGCGCC
ATGAATGTCATTCAGCCATTGGTTTTTTTGTTTGTCGCTTTGATGATTGTTTTAATCTATGCAGCTATGTTGCTACCTAT
TTATGCTCAGATGGATCTGGGCATGTAG

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (47-164)

• Type II secretion system (T2SS), protein F (T2SSF) (240-346)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	50.145	97.183	0.487
comYB	Streptococcus mutans UA159	50.145	97.183	0.487
comYB	Streptococcus gordonii str. Challis substr. CH1	50	95.775	0.479
comGB	Lactococcus lactis subsp. cremoris KW2	48.094	96.056	0.462
comGB/cglB	Streptococcus pneumoniae R6	46.567	94.366	0.439
comGB/cglB	Streptococcus pneumoniae TIGR4	46.567	94.366	0.439
comGB/cglB	Streptococcus mitis NCTC 12261	46.567	94.366	0.439
comGB/cglB	Streptococcus pneumoniae Rx1	46.567	94.366	0.439
comGB/cglB	Streptococcus pneumoniae D39	46.567	94.366	0.439
comGB/cglB	Streptococcus mitis SK321	45.97	94.366	0.434