Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   WDV79_RS09105 Genome accession   NZ_CP147731
Coordinates   1808998..1809393 (+) Length   131 a.a.
NCBI ID   WP_000282447.1    Uniprot ID   A0AAV3JLT6
Organism   Streptococcus agalactiae strain SagR266     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1802739..1841906 1808998..1809393 within 0


Gene organization within MGE regions


Location: 1802739..1841906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDV79_RS09050 (WDV79_09050) - 1802739..1802945 (+) 207 WP_000798241.1 helix-turn-helix transcriptional regulator -
  WDV79_RS09055 (WDV79_09055) - 1803004..1803141 (+) 138 WP_001865900.1 hypothetical protein -
  WDV79_RS09060 (WDV79_09060) - 1803182..1803637 (+) 456 WP_000905673.1 hypothetical protein -
  WDV79_RS09065 (WDV79_09065) - 1803706..1804371 (+) 666 WP_000008113.1 type II CAAX endopeptidase family protein -
  WDV79_RS09070 (WDV79_09070) proC 1804392..1805162 (-) 771 WP_001865901.1 pyrroline-5-carboxylate reductase -
  WDV79_RS09075 (WDV79_09075) pepA 1805232..1806299 (-) 1068 WP_001281323.1 glutamyl aminopeptidase -
  WDV79_RS09080 (WDV79_09080) - 1806484..1806723 (-) 240 WP_000660180.1 hypothetical protein -
  WDV79_RS09085 (WDV79_09085) - 1806884..1807168 (+) 285 WP_000791272.1 DUF4651 domain-containing protein -
  WDV79_RS09090 (WDV79_09090) - 1807165..1807488 (+) 324 WP_000602781.1 thioredoxin family protein -
  WDV79_RS09095 (WDV79_09095) ytpR 1807521..1808147 (+) 627 WP_000578327.1 YtpR family tRNA-binding protein -
  WDV79_RS09100 (WDV79_09100) - 1808201..1808917 (-) 717 WP_000186185.1 class I SAM-dependent methyltransferase -
  WDV79_RS09105 (WDV79_09105) ssbA 1808998..1809393 (+) 396 WP_000282447.1 single-stranded DNA-binding protein Machinery gene
  WDV79_RS09110 (WDV79_09110) - 1809517..1810161 (+) 645 WP_000416612.1 HAD family hydrolase -
  WDV79_RS09115 (WDV79_09115) - 1810188..1811933 (+) 1746 WP_000930334.1 LytS/YhcK type 5TM receptor domain-containing protein -
  WDV79_RS09120 (WDV79_09120) - 1811914..1812654 (+) 741 WP_000697630.1 LytTR family transcriptional regulator DNA-binding domain-containing protein -
  WDV79_RS09125 (WDV79_09125) - 1812824..1813279 (+) 456 WP_000683316.1 CidA/LrgA family protein -
  WDV79_RS09130 (WDV79_09130) lrgB 1813281..1814009 (+) 729 WP_000421724.1 antiholin-like protein LrgB -
  WDV79_RS09135 (WDV79_09135) - 1814252..1815880 (+) 1629 WP_000170507.1 ABC transporter substrate-binding protein -
  WDV79_RS09140 (WDV79_09140) - 1815993..1816969 (+) 977 Protein_1755 ABC transporter permease -
  WDV79_RS09145 (WDV79_09145) - 1816966..1817787 (+) 822 WP_000603397.1 ABC transporter permease -
  WDV79_RS09150 (WDV79_09150) - 1817799..1818602 (+) 804 WP_000140984.1 ABC transporter ATP-binding protein -
  WDV79_RS09155 (WDV79_09155) - 1818586..1819212 (+) 627 WP_000171309.1 ABC transporter ATP-binding protein -
  WDV79_RS09160 (WDV79_09160) treP 1819495..1821525 (+) 2031 WP_000434616.1 PTS system trehalose-specific EIIBC component -
  WDV79_RS09165 (WDV79_09165) treC 1821747..1823372 (+) 1626 WP_000151017.1 alpha,alpha-phosphotrehalase -
  WDV79_RS09170 (WDV79_09170) - 1823588..1825624 (+) 2037 WP_000228183.1 BglG family transcription antiterminator -
  WDV79_RS09175 (WDV79_09175) - 1825627..1825911 (+) 285 WP_000944235.1 PTS sugar transporter subunit IIB -
  WDV79_RS09180 (WDV79_09180) - 1825924..1827279 (+) 1356 WP_000677360.1 PTS ascorbate transporter subunit IIC -
  WDV79_RS09185 (WDV79_09185) - 1827282..1828139 (+) 858 WP_000203489.1 transketolase -
  WDV79_RS09190 (WDV79_09190) - 1828136..1829065 (+) 930 WP_001203821.1 transketolase C-terminal domain-containing protein -
  WDV79_RS09195 (WDV79_09195) - 1829174..1830433 (+) 1260 WP_001203068.1 ferric reductase-like transmembrane domain-containing protein -
  WDV79_RS09200 (WDV79_09200) rpsO 1830521..1830790 (+) 270 WP_001018249.1 30S ribosomal protein S15 -
  WDV79_RS09205 (WDV79_09205) pnp 1831171..1833300 (+) 2130 WP_000043850.1 polyribonucleotide nucleotidyltransferase -
  WDV79_RS09210 (WDV79_09210) - 1833302..1834054 (+) 753 WP_000204782.1 SseB family protein -
  WDV79_RS09215 (WDV79_09215) cysE 1834063..1834647 (+) 585 WP_000539954.1 serine O-acetyltransferase -
  WDV79_RS09220 (WDV79_09220) - 1834657..1834839 (+) 183 WP_000656476.1 lipoprotein -
  WDV79_RS09225 (WDV79_09225) cysS 1834836..1836179 (+) 1344 WP_000591131.1 cysteine--tRNA ligase -
  WDV79_RS09230 (WDV79_09230) - 1836172..1836558 (+) 387 WP_000568029.1 Mini-ribonuclease 3 -
  WDV79_RS09235 (WDV79_09235) rlmB 1836661..1837416 (+) 756 WP_000178026.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  WDV79_RS09240 (WDV79_09240) - 1837413..1837931 (+) 519 WP_000716636.1 NYN domain-containing protein -
  WDV79_RS09245 (WDV79_09245) - 1838024..1838884 (+) 861 WP_000143135.1 DegV family protein -
  WDV79_RS09250 (WDV79_09250) - 1839421..1839540 (+) 120 Protein_1777 helix-turn-helix domain-containing protein -
  WDV79_RS09255 (WDV79_09255) rplM 1839765..1840211 (+) 447 WP_001865567.1 50S ribosomal protein L13 -
  WDV79_RS09260 (WDV79_09260) rpsI 1840232..1840624 (+) 393 WP_000035940.1 30S ribosomal protein S9 -
  WDV79_RS09265 (WDV79_09265) - 1840752..1841906 (-) 1155 WP_000022165.1 site-specific integrase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14774.80 Da        Isoelectric Point: 7.0189

>NTDB_id=948340 WDV79_RS09105 WP_000282447.1 1808998..1809393(+) (ssbA) [Streptococcus agalactiae strain SagR266]
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGEREADFINVVMWGRLAETLASYGTKGSLISIDGELRTR
KYEKDGQTHYITEVLASSFQLLESRAQRAMRENNVSGDLSDLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=948340 WDV79_RS09105 WP_000282447.1 1808998..1809393(+) (ssbA) [Streptococcus agalactiae strain SagR266]
ATGTATAATAAAGTTATTATGATTGGGCGTCTAACAGCAAAGCCTGAGATGGTAAAAACACCAACTGACAAGTCAGTGAC
GCGTGCAACTGTTGCTGTTAATAGACGCTTTAAAGGAAGTAATGGTGAGCGTGAAGCAGATTTTATTAATGTGGTTATGT
GGGGTCGTCTAGCGGAAACCCTTGCGAGCTATGGGACAAAGGGCTCTTTAATTTCAATAGATGGTGAATTGCGTACGCGC
AAGTACGAAAAGGATGGTCAAACGCACTATATCACTGAAGTATTAGCATCATCATTTCAGTTGCTAGAAAGCCGTGCCCA
ACGTGCTATGCGTGAAAATAACGTTTCTGGTGATTTGTCAGATTTAGTATTGGAAGAAGAGGAGCTCCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

80.916

100

0.809
  ssbB/cilA Streptococcus pneumoniae R6

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae Rx1

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae D39

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae TIGR4

77.099

100

0.771
  ssbB Streptococcus sobrinus strain NIDR 6715-7

77.099

100

0.771
  ssbB/cilA Streptococcus mitis NCTC 12261

76.336

100

0.763
  ssbB/cilA Streptococcus mitis SK321

76.336

100

0.763
  ssbB Lactococcus lactis subsp. cremoris KW2

60.526

87.023

0.527
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

46.018

86.26

0.397