Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   WDM69_RS08105 Genome accession   NZ_CP147511
Coordinates   1800239..1800697 (+) Length   152 a.a.
NCBI ID   WP_338755284.1    Uniprot ID   -
Organism   Moraxella lincolnii strain 302605.3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1795239..1805697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDM69_RS08080 (WDM69_08080) - 1796262..1796591 (-) 330 WP_078307798.1 H-NS histone family protein -
  WDM69_RS08085 (WDM69_08085) - 1796899..1797939 (+) 1041 WP_240494920.1 IS110 family transposase -
  WDM69_RS08090 (WDM69_08090) - 1798050..1798925 (+) 876 WP_338755282.1 Rpn family recombination-promoting nuclease/putative transposase -
  WDM69_RS08095 (WDM69_08095) - 1799061..1799363 (+) 303 WP_338755913.1 pilin -
  WDM69_RS08100 (WDM69_08100) - 1799451..1799756 (-) 306 WP_338755283.1 hypothetical protein -
  WDM69_RS08105 (WDM69_08105) pilA 1800239..1800697 (+) 459 WP_338755284.1 pilin Machinery gene
  WDM69_RS08110 (WDM69_08110) - 1801073..1801369 (+) 297 WP_158077870.1 BrnT family toxin -
  WDM69_RS08115 (WDM69_08115) - 1801362..1801583 (+) 222 WP_078307107.1 hypothetical protein -
  WDM69_RS08120 (WDM69_08120) - 1801614..1802834 (-) 1221 WP_158077869.1 serine hydrolase domain-containing protein -
  WDM69_RS08125 (WDM69_08125) - 1803484..1804062 (-) 579 Protein_1578 transposase -
  WDM69_RS08130 (WDM69_08130) - 1804060..1804224 (+) 165 WP_240494876.1 transposase family protein -
  WDM69_RS08135 (WDM69_08135) - 1804221..1804502 (+) 282 WP_143823291.1 transposase -
  WDM69_RS08140 (WDM69_08140) - 1804760..1805161 (-) 402 WP_338755914.1 pilin -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 15918.28 Da        Isoelectric Point: 8.8781

>NTDB_id=946566 WDM69_RS08105 WP_338755284.1 1800239..1800697(+) (pilA) [Moraxella lincolnii strain 302605.3]
MNAQKGFTLIELMIVVAIIGILAAIAIPQYQNYIARSQVSRVMSEVGQMRTAAETCLLDGITAAKCEFGWTNSNLLGNGA
STDTKKLQGDALVATFNANTATLVAKFGGNAATAIKTKTLTWSRSTDGAWTCKTTVDAKFAPTGCSVATTTS

Nucleotide


Download         Length: 459 bp        

>NTDB_id=946566 WDM69_RS08105 WP_338755284.1 1800239..1800697(+) (pilA) [Moraxella lincolnii strain 302605.3]
ATGAACGCTCAAAAAGGTTTTACTCTTATCGAATTGATGATTGTGGTTGCCATTATCGGTATCCTAGCTGCCATCGCAAT
CCCACAATACCAAAACTACATCGCCCGCTCACAAGTTAGCCGTGTGATGAGTGAAGTTGGACAGATGAGAACTGCAGCTG
AAACCTGCTTGCTAGATGGCATTACTGCCGCCAAATGTGAATTTGGATGGACAAACAGCAATTTACTTGGTAATGGAGCC
AGTACTGACACAAAAAAACTACAGGGAGACGCCCTGGTAGCAACATTTAATGCTAATACAGCAACCCTAGTAGCTAAGTT
TGGTGGTAACGCAGCCACAGCCATTAAGACCAAGACATTAACCTGGAGCCGTAGTACTGATGGTGCTTGGACTTGTAAAA
CTACTGTTGATGCTAAGTTTGCACCCACTGGATGTAGTGTTGCTACAACTACTTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter baumannii strain A118

48.684

100

0.487
  pilA Pseudomonas aeruginosa PAK

42.405

100

0.441
  pilA2 Legionella pneumophila strain ERS1305867

41.611

98.026

0.408
  pilA2 Legionella pneumophila str. Paris

41.216

97.368

0.401
  comP Acinetobacter baylyi ADP1

37.58

100

0.388
  pilA/pilAI Pseudomonas stutzeri DSM 10701

41.259

94.079

0.388
  pilA Haemophilus influenzae 86-028NP

36.129

100

0.368
  pilA Vibrio cholerae C6706

36.842

100

0.368
  pilA Vibrio cholerae strain A1552

36.842

100

0.368
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

36.842

100

0.368