Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   WBM82_RS17060 Genome accession   NZ_CP147494
Coordinates   3196351..3196995 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3191351..3201995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBM82_RS17025 (WBM82_17075) mrpB 3192541..3192972 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  WBM82_RS17030 (WBM82_17080) mrpC 3192972..3193313 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  WBM82_RS17035 (WBM82_17085) mrpD 3193306..3194787 (+) 1482 WP_029725869.1 Na+/H+ antiporter subunit D -
  WBM82_RS17040 (WBM82_17090) mrpE 3194793..3195269 (+) 477 WP_128422372.1 Na+/H+ antiporter subunit E -
  WBM82_RS17045 (WBM82_17095) mrpF 3195269..3195553 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  WBM82_RS17050 (WBM82_17100) mnhG 3195537..3195911 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  WBM82_RS17055 (WBM82_17105) yuxO 3195952..3196332 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  WBM82_RS17060 (WBM82_17110) comA 3196351..3196995 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  WBM82_RS17065 (WBM82_17115) comP 3197076..3199376 (-) 2301 WP_088300729.1 histidine kinase Regulator
  WBM82_RS17070 (WBM82_17120) comX 3199388..3199552 (-) 165 WP_015384519.1 competence pheromone ComX -
  WBM82_RS17075 (WBM82_17125) - 3199565..3200425 (-) 861 WP_128422373.1 polyprenyl synthetase family protein -
  WBM82_RS17080 (WBM82_17130) degQ 3200610..3200750 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  WBM82_RS17085 (WBM82_17135) - 3200972..3201097 (+) 126 WP_141770195.1 hypothetical protein -
  WBM82_RS17090 (WBM82_17140) - 3201212..3201580 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=946445 WBM82_RS17060 WP_003220716.1 3196351..3196995(-) (comA) [Bacillus subtilis strain YT1]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=946445 WBM82_RS17060 WP_003220716.1 3196351..3196995(-) (comA) [Bacillus subtilis strain YT1]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1