Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   V4Q90_RS10860 Genome accession   NZ_CP146990
Coordinates   2437769..2438182 (-) Length   137 a.a.
NCBI ID   WP_011214167.1    Uniprot ID   -
Organism   Legionella pneumophila strain LEG1116     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2432769..2443182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4Q90_RS10850 (V4Q90_10820) letS 2433698..2436430 (+) 2733 WP_011214165.1 two-component system sensor histidine kinase LetS Regulator
  V4Q90_RS10855 (V4Q90_10825) - 2436528..2437772 (+) 1245 WP_011214166.1 6-phosphofructokinase -
  V4Q90_RS10860 (V4Q90_10830) pilA2 2437769..2438182 (-) 414 WP_011214167.1 pilin Machinery gene
  V4Q90_RS10865 (V4Q90_10835) pilA2 2438376..2438786 (-) 411 WP_011214168.1 pilin Machinery gene
  V4Q90_RS10870 (V4Q90_10840) - 2439089..2439406 (+) 318 WP_011214169.1 BolA/IbaG family iron-sulfur metabolism protein -
  V4Q90_RS10875 (V4Q90_10845) - 2439481..2440902 (+) 1422 WP_011214170.1 APC family permease -
  V4Q90_RS10880 (V4Q90_10850) - 2441008..2442438 (-) 1431 WP_011214171.1 cellulase family glycosylhydrolase -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14493.85 Da        Isoelectric Point: 6.2016

>NTDB_id=945426 V4Q90_RS10860 WP_011214167.1 2437769..2438182(-) (pilA2) [Legionella pneumophila strain LEG1116]
MRTKGFTLIELMIVAAILGILVAIAMPAYQDYTIRARVVEGLEMASAAKLAVVETSLIDNTLPANQADTGYTSPAPTINV
ASIAIGNQGIITITYTANAGNGTITMVPTLDATNRILTWDCTGGTLISKYRPAYCRP

Nucleotide


Download         Length: 414 bp        

>NTDB_id=945426 V4Q90_RS10860 WP_011214167.1 2437769..2438182(-) (pilA2) [Legionella pneumophila strain LEG1116]
ATGAGAACGAAAGGATTTACTTTAATCGAGCTGATGATCGTTGCCGCTATACTTGGGATTCTGGTTGCCATCGCAATGCC
AGCCTATCAAGACTATACCATCAGAGCACGGGTGGTTGAAGGATTGGAAATGGCTTCGGCCGCTAAATTAGCTGTTGTTG
AAACGAGTTTAATTGATAACACTTTGCCAGCAAATCAGGCAGATACGGGTTATACCAGTCCAGCCCCAACAATTAATGTA
GCCTCTATAGCCATTGGTAATCAAGGCATTATTACCATTACCTACACTGCAAACGCAGGTAATGGCACTATTACAATGGT
TCCCACCCTGGATGCTACTAACAGAATACTCACTTGGGATTGCACTGGCGGTACCCTGATTAGTAAATATCGTCCAGCCT
ACTGCCGCCCTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-136)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila str. Paris

72.993

100

0.73
  pilA2 Legionella pneumophila strain ERS1305867

72.263

100

0.723
  pilA Ralstonia pseudosolanacearum GMI1000

45.399

100

0.54
  comP Acinetobacter baylyi ADP1

45.517

100

0.482
  pilA/pilA1 Eikenella corrodens VA1

36.184

100

0.401
  pilA/pilAI Pseudomonas stutzeri DSM 10701

37.41

100

0.38
  pilA/pilAII Pseudomonas stutzeri DSM 10701

37.41

100

0.38
  pilA Vibrio cholerae strain A1552

34.228

100

0.372
  pilA Vibrio cholerae C6706

34.228

100

0.372
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

34.228

100

0.372