Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   WAX86_RS13050 Genome accession   NZ_CP146970
Coordinates   2860086..2861312 (+) Length   408 a.a.
NCBI ID   WP_341488890.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. damselae strain WMD-P2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2855086..2866312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAX86_RS13030 (WAX86_13030) pdhR 2855768..2856541 (-) 774 WP_005297609.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -
  WAX86_RS13035 (WAX86_13035) ampD 2856901..2857479 (-) 579 WP_086367527.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  WAX86_RS13040 (WAX86_13040) pilA 2857934..2858329 (+) 396 WP_138241975.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WAX86_RS13045 (WAX86_13045) pilB 2858329..2860020 (+) 1692 WP_341488889.1 type IV-A pilus assembly ATPase PilB Machinery gene
  WAX86_RS13050 (WAX86_13050) pilC 2860086..2861312 (+) 1227 WP_341488890.1 type II secretion system F family protein Machinery gene
  WAX86_RS13055 (WAX86_13055) pilD 2861495..2862373 (+) 879 WP_065170821.1 A24 family peptidase Machinery gene
  WAX86_RS13060 (WAX86_13060) coaE 2862375..2862977 (+) 603 WP_341488891.1 dephospho-CoA kinase -
  WAX86_RS13065 (WAX86_13065) zapD 2863045..2863782 (+) 738 WP_005297594.1 cell division protein ZapD -
  WAX86_RS13070 (WAX86_13070) yacG 2863791..2864000 (+) 210 WP_005297592.1 DNA gyrase inhibitor YacG -
  WAX86_RS13075 (WAX86_13075) mutT 2864067..2864474 (+) 408 WP_188007686.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45044.21 Da        Isoelectric Point: 10.0330

>NTDB_id=945220 WAX86_RS13050 WP_341488890.1 2860086..2861312(+) (pilC) [Photobacterium damselae subsp. damselae strain WMD-P2]
MAQLAANKIRYYRWRGVNQGGKKITGVTLGFQEQEVRAQLTEQMIQVKKIKRTNPSTLDKIRNQMKSSDVTAITRQLATM
IESGVPIVQALKLMASSHHKAEVRAVLTQVNTQVEAGASLSKALKSSSPLFDNFYCDLVATGEETGYLGQVFVRLATYRE
KSEAMRKKVIKAMIYPSMVMLTAISVTILMLVFVIPQFAAIFGSFGAELPWFTRQVLKASDFLINYGGYLAVGLLLVLVL
YRYSYKRSYSFRLRMARLSLRLPIIGNVVLKATIARFARTLATTFSAGIPLLTGLQSAGKTAGNLHIEEAIMEAHTSAAA
GMPLYLSLRQCNVFPELMLQMTMIGEESGSLDDMLNKMASLYENDVDNIVDNLGQILEPLIIIVLGVLIGGLLVAMYMPI
FTLMSVIG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=945220 WAX86_RS13050 WP_341488890.1 2860086..2861312(+) (pilC) [Photobacterium damselae subsp. damselae strain WMD-P2]
ATGGCACAGTTAGCCGCTAATAAAATCCGTTATTATCGCTGGCGAGGGGTAAACCAAGGCGGCAAGAAAATCACAGGCGT
AACCTTAGGTTTTCAAGAACAAGAAGTGCGAGCGCAACTGACCGAGCAGATGATCCAAGTAAAAAAGATCAAGCGCACCA
ACCCTTCTACGCTCGATAAAATCCGCAATCAGATGAAAAGCAGCGATGTAACGGCTATTACTCGCCAACTTGCGACCATG
ATCGAATCTGGAGTTCCGATTGTACAAGCTCTGAAGCTAATGGCCAGTAGCCACCATAAAGCAGAAGTGCGTGCGGTATT
AACTCAGGTCAACACCCAAGTAGAAGCCGGAGCCTCACTGTCAAAAGCACTAAAATCAAGTTCGCCGCTGTTTGATAATT
TCTACTGTGACTTAGTCGCAACCGGGGAAGAAACCGGGTATCTTGGTCAGGTATTTGTTCGCTTAGCCACGTATCGAGAA
AAAAGCGAAGCGATGCGAAAAAAAGTGATTAAGGCGATGATTTACCCATCCATGGTGATGCTAACGGCCATCAGTGTCAC
TATCTTAATGCTGGTCTTTGTTATCCCTCAATTTGCCGCTATTTTTGGCAGTTTTGGCGCAGAACTCCCTTGGTTTACTC
GCCAAGTATTAAAAGCCTCGGATTTCCTAATTAACTATGGGGGATACTTAGCTGTAGGTTTGCTGCTTGTACTTGTGCTT
TATCGTTATAGCTATAAACGGTCCTATTCGTTTCGGTTACGTATGGCTCGGTTAAGCTTACGCCTGCCCATTATCGGTAA
CGTTGTACTCAAAGCAACTATTGCCCGTTTTGCTCGAACCCTTGCGACCACTTTTAGTGCCGGTATTCCCCTATTAACAG
GGCTACAGTCGGCTGGTAAAACCGCAGGCAACTTACATATTGAAGAAGCTATTATGGAGGCGCATACCAGTGCAGCGGCG
GGGATGCCACTCTATTTATCTTTGCGCCAATGCAATGTTTTTCCAGAGCTTATGTTGCAGATGACCATGATCGGGGAAGA
GTCCGGTTCTCTTGACGATATGCTCAATAAAATGGCAAGCCTATATGAAAACGATGTCGATAATATCGTTGATAACCTCG
GCCAAATTTTAGAGCCTTTGATCATCATTGTGCTTGGCGTTCTGATCGGTGGTTTACTCGTGGCAATGTATATGCCGATC
TTCACCCTAATGAGCGTGATTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

55.087

98.775

0.544
  pilC Vibrio cholerae strain A1552

55.25

98.039

0.542
  pilG Neisseria meningitidis 44/76-A

41.975

99.265

0.417
  pilG Neisseria gonorrhoeae MS11

41.975

99.265

0.417
  pilC Acinetobacter baumannii D1279779

40.441

100

0.404
  pilC Pseudomonas stutzeri DSM 10701

40.049

99.755

0.4
  pilC Acinetobacter baylyi ADP1

39.547

97.304

0.385
  pilC Legionella pneumophila strain ERS1305867

38.191

97.549

0.373