Detailed information NTG0945221

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: WAX86_RS13055
• Genome accession: NZ_CP146970
• Coordinates: 2861495..2862373 (+)
• Length: 292 a.a.
• NCBI ID: WP_065170821.1
• Uniprot ID: -
• Organism: Photobacterium damselae subsp. damselae strain WMD-P2
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2856495..2867373

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WAX86_RS13035 (WAX86_13035)	ampD	2856901..2857479 (-)	579	WP_086367527.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
WAX86_RS13040 (WAX86_13040)	pilA	2857934..2858329 (+)	396	WP_138241975.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
WAX86_RS13045 (WAX86_13045)	pilB	2858329..2860020 (+)	1692	WP_341488889.1	type IV-A pilus assembly ATPase PilB	Machinery gene
WAX86_RS13050 (WAX86_13050)	pilC	2860086..2861312 (+)	1227	WP_341488890.1	type II secretion system F family protein	Machinery gene
WAX86_RS13055 (WAX86_13055)	pilD	2861495..2862373 (+)	879	WP_065170821.1	A24 family peptidase	Machinery gene
WAX86_RS13060 (WAX86_13060)	coaE	2862375..2862977 (+)	603	WP_341488891.1	dephospho-CoA kinase	-
WAX86_RS13065 (WAX86_13065)	zapD	2863045..2863782 (+)	738	WP_005297594.1	cell division protein ZapD	-
WAX86_RS13070 (WAX86_13070)	yacG	2863791..2864000 (+)	210	WP_005297592.1	DNA gyrase inhibitor YacG	-
WAX86_RS13075 (WAX86_13075)	mutT	2864067..2864474 (+)	408	WP_188007686.1	8-oxo-dGTP diphosphatase MutT	-

Sequence

Protein

• Length: 292 a.a.
• Molecular weight: 32529.06 Da
• Isoelectric Point: 8.2918

>NTDB_id=945221 WAX86_RS13055 WP_065170821.1 2861495..2862373(+) (pilD) [Photobacterium damselae subsp. damselae strain WMD-P2]
MAIFSYYPWLFPVFATIFGLLVGSFLNVVIYRLPIMMERQWRNECIEAFPDLIKADAKLNTDTFNLSVPRSRCPHCGHLI
SAVENIPVISWLVLKGKCKSCHAPISRRYPMIELLTAALCGTVAILFPPTWWAIAVIFFTFALIALTFIDIDKMLLPDQI
TLPLLWAGIFLALLGISPVSLQDSVIGAIAGYLCLWSVFWVFKLLTKKDGMGYGDFKLLAALGAWLGWQMLPVVVLLSSL
AGAICGIILLKVQKSDHQTPFSFGPYLAIAGWISLLWGHSIITWYVSNILGM

Nucleotide

• Length: 879 bp

>NTDB_id=945221 WAX86_RS13055 WP_065170821.1 2861495..2862373(+) (pilD) [Photobacterium damselae subsp. damselae strain WMD-P2]
ATGGCTATTTTCAGTTACTACCCTTGGCTATTTCCTGTTTTTGCTACCATTTTTGGCTTATTGGTAGGCAGCTTTCTCAA
TGTGGTGATCTACCGCTTACCCATTATGATGGAGCGTCAATGGCGTAACGAATGTATTGAAGCGTTTCCGGATTTAATCA
AAGCCGATGCGAAGTTAAATACCGACACATTTAATTTAAGCGTGCCACGTTCTCGTTGTCCTCATTGTGGTCATCTCATT
AGTGCTGTAGAAAATATCCCTGTTATTAGTTGGCTGGTATTAAAAGGGAAGTGTAAATCTTGTCACGCACCGATTAGCCG
ACGTTACCCGATGATTGAACTATTAACTGCAGCATTGTGTGGAACGGTTGCGATCCTATTTCCACCAACTTGGTGGGCGA
TTGCCGTCATCTTTTTCACTTTTGCCTTAATTGCTCTAACTTTTATCGATATTGATAAGATGCTACTGCCCGATCAAATC
ACCCTACCACTACTTTGGGCTGGTATTTTTCTCGCTCTATTAGGCATTAGTCCTGTATCGCTACAAGATTCTGTGATTGG
TGCAATTGCGGGTTATCTCTGTTTGTGGAGCGTCTTTTGGGTCTTTAAATTATTAACCAAAAAAGACGGTATGGGTTATG
GCGACTTTAAACTGTTAGCCGCTTTAGGAGCATGGCTTGGCTGGCAAATGCTGCCTGTTGTGGTTCTGCTATCCTCTCTT
GCTGGGGCTATTTGTGGCATTATCTTATTGAAAGTACAAAAAAGTGATCACCAAACCCCATTTTCCTTTGGTCCTTATCT
TGCGATTGCTGGCTGGATCAGTCTATTGTGGGGACACTCGATCATCACTTGGTATGTCAGTAATATTTTAGGAATGTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	65.411	100	0.654
pilD	Vibrio cholerae strain A1552	62.116	100	0.623
pilD	Acinetobacter nosocomialis M2	52.045	92.123	0.479
pilD	Acinetobacter baumannii D1279779	52.045	92.123	0.479
pilD	Neisseria gonorrhoeae MS11	48.201	95.205	0.459