Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   V6985_RS19140 Genome accession   NZ_CP146071
Coordinates   4140217..4141458 (+) Length   413 a.a.
NCBI ID   WP_059113460.1    Uniprot ID   A0AAP3UVF0
Organism   Aeromonas salmonicida strain GMT3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4135217..4146458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6985_RS19115 (V6985_19120) ampD 4135554..4136126 (-) 573 WP_169047635.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  V6985_RS19120 (V6985_19125) - 4136276..4136746 (+) 471 WP_256685968.1 TIGR02281 family clan AA aspartic protease -
  V6985_RS19125 (V6985_19130) nadC 4136751..4137608 (+) 858 WP_409011399.1 carboxylating nicotinate-nucleotide diphosphorylase -
  V6985_RS19130 (V6985_19135) tapA 4137944..4138378 (+) 435 WP_310012712.1 type IVa pilus major pilin TapA -
  V6985_RS19135 (V6985_19140) pilB 4138382..4140088 (+) 1707 WP_058394588.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  V6985_RS19140 (V6985_19145) pilC 4140217..4141458 (+) 1242 WP_059113460.1 type II secretion system F family protein Machinery gene
  V6985_RS19145 (V6985_19150) pilD 4141522..4142397 (+) 876 WP_256685974.1 A24 family peptidase Machinery gene
  V6985_RS19150 (V6985_19155) coaE 4142417..4143031 (+) 615 WP_256685976.1 dephospho-CoA kinase -
  V6985_RS19155 (V6985_19160) zapD 4143069..4143791 (+) 723 WP_256685978.1 cell division protein ZapD -
  V6985_RS19160 (V6985_19165) yacG 4143801..4143995 (+) 195 WP_005314167.1 DNA gyrase inhibitor YacG -
  V6985_RS19165 (V6985_19170) - 4144109..4145437 (+) 1329 WP_256687759.1 IS4 family transposase -
  V6985_RS19170 (V6985_19175) mutT 4145510..4145917 (-) 408 WP_005314168.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45324.44 Da        Isoelectric Point: 9.8834

>NTDB_id=941558 V6985_RS19140 WP_059113460.1 4140217..4141458(+) (pilC) [Aeromonas salmonicida strain GMT3]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTRVSKKSQGLFSKGGARIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSDALRRHPRHFDALYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPAMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQNWWYVIFGGIG
LGIFLYVRAWRASQKVKDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=941558 V6985_RS19140 WP_059113460.1 4140217..4141458(+) (pilC) [Aeromonas salmonicida strain GMT3]
ATGGCAACGCTAACGCAAAAACAGAATGCCCCCAAGAAAGTCTTTGCCTTCCGCTGGAGCGGGGTAAATCGCAAGGGTCA
GAAGGTATCCGGCGAGCTGCAGGCCGACAGCATCAATACGGTCAAGGCCGAACTGCGCAAGCAGGGGGTCAATGTCACCA
GGGTGAGCAAAAAGAGCCAGGGGCTTTTTTCCAAGGGTGGCGCCAGGATCAAACCGATGGATATCGCCATCGTTTCCCGT
CAGATCACTACAATGCTCTCCGCCGGGGTACCTCTGGTACAGAGCCTGCAGATCATTGCCCGCAGCCATGAGAAAGCCGC
CATGCGCGAGCTGATGGGCCAGATCGCTGCGGATGTGGAGACAGGCACCCCGATGTCAGATGCCCTGCGCCGCCACCCTC
GCCACTTTGATGCGCTCTATTGCGATCTGGTGGAAGCAGGCGAGCAATCCGGCGCGCTGGAAACCATCTACGATCGCATC
GCCACCTATAGAGAAAAGTCGGAAGCGCTCAAGTCCAAGATCAAGAAGGCGATGTTCTATCCGGCCATGGTCATCCTGGT
CGCCATCGTCGTCACCTCCATACTGCTGCTGTTCGTCATCCCGCAGTTCGAGGACATCTTCAAGAGCTTTGGCGCCGAGC
TGCCCATCTTCACCCAGTTTGTCATCGGCATCTCTCGCTTCATGCAGAATTGGTGGTATGTGATCTTTGGCGGGATAGGG
CTTGGCATTTTCCTTTATGTAAGAGCCTGGCGCGCGTCCCAGAAGGTCAAAGACAACACAGACAAGTTCATCCTCACCAT
TCCCGTGGTGGGCATGATACTGCACAAGGCGGCCATGGCCCGCTTCGCCCGCACCCTCTCCACCACCTTCTCGGCGGGCA
TACCCCTGGTGGATGCACTGATCTCGGCCGCCGGCGCCTCAGGCAACTATGTCTATCGCACCGCCGTCATGGCCATTCGC
AACGAGGTGGTAGCCGGCATGCAGATCAACGTGGCCATGCGCACCGTGGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCAGGCGCCATCGATGATATGCTCTCCAAGGTCGCGACCATCTTCGAGCAAGAGGTCGATGACT
TGGTCGATGGCCTCACCAGCCTGCTGGAGCCCCTCATCATGGTGGTGCTGGGGGTACTGGTCGGCGGCATGGTCGTCGCC
ATGTACCTGCCCATATTCAAGCTGGGTGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.313

95.884

0.54
  pilC Acinetobacter baumannii D1279779

54.5

96.852

0.528
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Legionella pneumophila strain ERS1305867

50.617

98.063

0.496
  pilC Vibrio cholerae strain A1552

47.382

97.094

0.46
  pilC Vibrio campbellii strain DS40M4

46.535

97.821

0.455
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

37.75

96.852

0.366