NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	V6985_RS19145	Genome accession	NZ_CP146071
Coordinates	4141522..4142397 (+)	Length	291 a.a.
NCBI ID	WP_256685974.1	Uniprot ID	-
Organism	Aeromonas salmonicida strain GMT3
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4136522..4147397

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6985_RS19125 (V6985_19130)	nadC	4136751..4137608 (+)	858	WP_409011399.1	carboxylating nicotinate-nucleotide diphosphorylase	-
V6985_RS19130 (V6985_19135)	tapA	4137944..4138378 (+)	435	WP_310012712.1	type IVa pilus major pilin TapA	-
V6985_RS19135 (V6985_19140)	pilB	4138382..4140088 (+)	1707	WP_058394588.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
V6985_RS19140 (V6985_19145)	pilC	4140217..4141458 (+)	1242	WP_059113460.1	type II secretion system F family protein	Machinery gene
V6985_RS19145 (V6985_19150)	pilD	4141522..4142397 (+)	876	WP_256685974.1	A24 family peptidase	Machinery gene
V6985_RS19150 (V6985_19155)	coaE	4142417..4143031 (+)	615	WP_256685976.1	dephospho-CoA kinase	-
V6985_RS19155 (V6985_19160)	zapD	4143069..4143791 (+)	723	WP_256685978.1	cell division protein ZapD	-
V6985_RS19160 (V6985_19165)	yacG	4143801..4143995 (+)	195	WP_005314167.1	DNA gyrase inhibitor YacG	-
V6985_RS19165 (V6985_19170)	-	4144109..4145437 (+)	1329	WP_256687759.1	IS4 family transposase	-
V6985_RS19170 (V6985_19175)	mutT	4145510..4145917 (-)	408	WP_005314168.1	8-oxo-dGTP diphosphatase MutT	-

Sequence

Protein

Download Length: 291 a.a. Molecular weight: 32423.70 Da Isoelectric Point: 7.0167

                                >NTDB_id=941559 V6985_RS19145 WP_256685974.1 4141522..4142397(+) (pilD) [Aeromonas salmonicida strain GMT3]

MTLLLELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFSSDTPQPEADERYNLMVPRSCCPHCNH

PITALENIPLLSWLWLKGRCRGCQAAISARYPLVELLTALLSVVVAMTLTPGWGTLAALLLTWVLVALTFIDLDKMLLPD

QLTLPLLWGGLLFNLLGGYVPLGDAVIGAMAGYLVLWSLYWAFKLLTGKDGMGYGDFKLLAALGAWLGWQALPIVLLLSS

LVGAIFGIGLILLRNHHQSKPIPFGPYLAIAGWIALLWGDSITRWYLSTIL

Nucleotide

Download Length: 876 bp

                                >NTDB_id=941559 V6985_RS19145 WP_256685974.1 4141522..4142397(+) (pilD) [Aeromonas salmonicida strain GMT3]

ATGACACTTCTTCTCGAGCTGGCACACGGCTTGCCATGGCTCTACTTCTCGCTGGTATTTCTCTTCTCCCTGATGATCGG

CAGCTTTCTCAATGTGGTGATCCACCGCCTGCCCATCATGCTGGAACGGGAGTGGCAGGCCGAATATCGCAGCTATTTCA

GTTCAGACACGCCGCAGCCAGAAGCTGACGAGCGCTACAACCTGATGGTGCCGCGCTCCTGCTGCCCTCACTGCAATCAC

CCCATAACGGCACTGGAAAACATTCCCCTGCTGAGCTGGCTCTGGCTCAAAGGTCGCTGCCGGGGCTGCCAGGCCGCCAT

TTCGGCTCGCTATCCGCTGGTGGAGCTGCTGACCGCCCTGCTCTCTGTGGTGGTTGCCATGACGCTCACCCCAGGCTGGG

GCACACTGGCTGCCCTCCTGCTGACCTGGGTGCTGGTGGCACTCACCTTTATCGATCTGGACAAGATGCTGCTGCCGGAC

CAGCTCACCTTGCCACTGCTGTGGGGTGGGCTGCTGTTCAACCTGCTTGGCGGATACGTGCCCCTCGGCGATGCTGTCAT

CGGCGCCATGGCAGGCTATCTGGTGCTGTGGAGCCTCTACTGGGCCTTCAAGCTGCTTACCGGCAAGGATGGCATGGGCT

ATGGGGACTTCAAACTGCTGGCGGCGCTGGGAGCCTGGCTTGGCTGGCAGGCGCTGCCCATAGTACTGCTGCTCTCTTCT

CTGGTCGGCGCCATCTTCGGCATTGGCCTCATTTTGCTGCGCAACCATCACCAGAGTAAACCCATCCCCTTTGGCCCCTA

TCTCGCCATCGCAGGCTGGATCGCACTGCTCTGGGGCGATAGCATCACCCGCTGGTATCTCTCCACTATCCTCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)

Type IV leader peptidase family (Peptidase_A24)

(140-248)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	60.764	98.969	0.601
pilD	Vibrio campbellii strain DS40M4	55.208	98.969	0.546
pilD	Acinetobacter baumannii D1279779	54.647	92.44	0.505
pilD	Acinetobacter nosocomialis M2	54.647	92.44	0.505
pilD	Neisseria gonorrhoeae MS11	50.373	92.096	0.464

Detailed information NTG0941559