Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   V5M36_RS01620 Genome accession   NZ_CP145906
Coordinates   365445..366671 (-) Length   408 a.a.
NCBI ID   WP_338561335.1    Uniprot ID   -
Organism   Acinetobacter sp. KS-LM10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 360445..371671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5M36_RS01590 (V5M36_01590) - 360460..361211 (+) 752 WP_338561322.1 IS5 family transposase -
  V5M36_RS01595 (V5M36_01595) - 361567..361890 (+) 324 WP_338561323.1 pyrimidine/purine nucleoside phosphorylase -
  V5M36_RS01600 (V5M36_01600) rlmB 362024..362773 (+) 750 WP_338561327.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  V5M36_RS01605 (V5M36_01605) - 362879..363802 (+) 924 WP_338561329.1 DMT family transporter -
  V5M36_RS01610 (V5M36_01610) coaE 363834..364454 (-) 621 WP_338561331.1 dephospho-CoA kinase -
  V5M36_RS01615 (V5M36_01615) pilD 364585..365445 (-) 861 WP_338561334.1 A24 family peptidase Machinery gene
  V5M36_RS01620 (V5M36_01620) pilC 365445..366671 (-) 1227 WP_338561335.1 type II secretion system F family protein Machinery gene
  V5M36_RS01625 (V5M36_01625) pilB 366697..368409 (-) 1713 WP_338561337.1 type IV-A pilus assembly ATPase PilB Machinery gene
  V5M36_RS01630 (V5M36_01630) tpiA 368673..369464 (+) 792 WP_338561339.1 triose-phosphate isomerase -
  V5M36_RS01635 (V5M36_01635) secG 369478..369807 (+) 330 WP_338561341.1 preprotein translocase subunit SecG -
  V5M36_RS01670 (V5M36_01670) rimP 371070..371594 (+) 525 WP_338561343.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44883.15 Da        Isoelectric Point: 9.9206

>NTDB_id=941056 V5M36_RS01620 WP_338561335.1 365445..366671(-) (pilC) [Acinetobacter sp. KS-LM10]
MAVNKVQIMPTYSYEGFDRKGVKVKGEIVARNLQLAKVTLRKQGISVRGIREKRKNILEGVMKKKVSTLDITIFTRQLAT
MIKAGVPLVQSFEIVAEGLDNPAMREVVLGIKSEVEGGNTFAGALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAVYK
EKSEVLKQKIKKAMKYPIAVIIVALIVTVILMVKVVPVFSEMFSSFGADLPAFTQMVVGMSNWTQKYWFVLLIGIIAVII
AFIQAKKRSKKLRDGLDKLSLKVPIFGDLVYKAIIARYSRTLSTTFAAGVPLIDALQSTAGATNNVVYEEAVMRIRDDVA
TGQQLQFAMRATNLFPSMAIQMVAIGEESGSLDTMLDKVATHYESEVDNAVDGLTSMMEPFIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=941056 V5M36_RS01620 WP_338561335.1 365445..366671(-) (pilC) [Acinetobacter sp. KS-LM10]
ATGGCCGTTAATAAAGTGCAAATAATGCCAACCTACTCATACGAAGGCTTCGATCGTAAGGGAGTGAAGGTTAAAGGGGA
AATCGTTGCTCGAAACCTGCAATTGGCAAAAGTCACGCTGCGCAAACAAGGCATCAGTGTCAGAGGTATTCGAGAAAAAA
GGAAGAATATTCTCGAAGGCGTCATGAAGAAAAAAGTATCGACACTCGATATCACGATTTTCACTCGCCAACTTGCAACG
ATGATTAAAGCGGGTGTACCGCTGGTACAAAGCTTCGAAATCGTCGCAGAAGGTCTGGACAATCCTGCCATGCGTGAAGT
CGTTTTGGGAATCAAAAGTGAAGTAGAAGGTGGTAATACTTTTGCGGGTGCACTCAGAAAATATCCTCAACACTTTGATA
ATTTATTTTGCTCATTGGTCGAATCAGGTGAACAATCGGGTGCGCTTGAAACCATGCTAGACCGTGTAGCGGTTTATAAA
GAAAAAAGTGAGGTTCTGAAACAAAAAATTAAAAAAGCAATGAAGTATCCAATCGCTGTCATTATTGTAGCCCTCATTGT
CACCGTTATTTTAATGGTCAAAGTCGTTCCTGTATTTTCTGAAATGTTTAGTTCATTTGGGGCTGATCTTCCAGCATTCA
CCCAAATGGTGGTTGGCATGTCGAACTGGACGCAAAAATACTGGTTTGTCTTATTGATTGGCATTATTGCTGTCATTATT
GCTTTTATCCAAGCCAAAAAGCGCAGTAAAAAATTGCGCGATGGCTTAGACAAATTATCATTAAAAGTCCCTATTTTTGG
TGACTTGGTTTATAAGGCCATCATTGCTCGTTACAGCCGCACGCTTTCAACTACGTTTGCAGCAGGTGTTCCATTGATCG
ACGCATTACAGTCGACTGCAGGTGCTACCAACAATGTAGTTTATGAAGAAGCCGTGATGCGTATTCGTGATGATGTTGCA
ACAGGTCAACAACTTCAATTTGCCATGCGTGCTACCAATTTATTTCCCTCAATGGCGATTCAGATGGTAGCGATTGGTGA
AGAATCTGGGTCTTTAGATACGATGCTCGACAAAGTCGCAACGCATTATGAAAGTGAAGTTGACAATGCCGTTGATGGCT
TAACCTCGATGATGGAGCCCTTTATCATGGCGATACTCGGCGTTCTGGTTGGCGGTCTTGTTATTGCGATGTACCTTCCA
ATTTTCCAAATGGGTTCCGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

84.069

100

0.841
  pilC Acinetobacter baylyi ADP1

78.922

100

0.789
  pilC Pseudomonas stutzeri DSM 10701

61.461

97.304

0.598
  pilC Legionella pneumophila strain ERS1305867

53.266

97.549

0.52
  pilG Neisseria gonorrhoeae MS11

47.792

94.363

0.451
  pilG Neisseria meningitidis 44/76-A

47.792

94.363

0.451
  pilC Vibrio cholerae strain A1552

43.317

99.02

0.429
  pilC Vibrio campbellii strain DS40M4

41.25

98.039

0.404
  pilC Thermus thermophilus HB27

37.656

98.284

0.37