Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   V5M36_RS01615 Genome accession   NZ_CP145906
Coordinates   364585..365445 (-) Length   286 a.a.
NCBI ID   WP_338561334.1    Uniprot ID   -
Organism   Acinetobacter sp. KS-LM10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 359585..370445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5M36_RS01590 (V5M36_01590) - 360460..361211 (+) 752 WP_338561322.1 IS5 family transposase -
  V5M36_RS01595 (V5M36_01595) - 361567..361890 (+) 324 WP_338561323.1 pyrimidine/purine nucleoside phosphorylase -
  V5M36_RS01600 (V5M36_01600) rlmB 362024..362773 (+) 750 WP_338561327.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  V5M36_RS01605 (V5M36_01605) - 362879..363802 (+) 924 WP_338561329.1 DMT family transporter -
  V5M36_RS01610 (V5M36_01610) coaE 363834..364454 (-) 621 WP_338561331.1 dephospho-CoA kinase -
  V5M36_RS01615 (V5M36_01615) pilD 364585..365445 (-) 861 WP_338561334.1 A24 family peptidase Machinery gene
  V5M36_RS01620 (V5M36_01620) pilC 365445..366671 (-) 1227 WP_338561335.1 type II secretion system F family protein Machinery gene
  V5M36_RS01625 (V5M36_01625) pilB 366697..368409 (-) 1713 WP_338561337.1 type IV-A pilus assembly ATPase PilB Machinery gene
  V5M36_RS01630 (V5M36_01630) tpiA 368673..369464 (+) 792 WP_338561339.1 triose-phosphate isomerase -
  V5M36_RS01635 (V5M36_01635) secG 369478..369807 (+) 330 WP_338561341.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 31692.01 Da        Isoelectric Point: 7.5040

>NTDB_id=941055 V5M36_RS01615 WP_338561334.1 364585..365445(-) (pilD) [Acinetobacter sp. KS-LM10]
MNELIHYLIQTPIALYLVVGVVSLCIGSFLNVVIYRTPKMMEQEWQQECTMLLHPEQAIIDESKLTLSQPASTCPQCKTK
IGWFQNIPVISWLFLKGKCGSCENPIGIRYPLIELLTAVSSLMVVAVYGPSIQMLFGLILTWMLIALTFIDFDTQLLPDR
YTLTLAGLGLALNSYSIYVSPSSAIWGYIIGFLCLWTVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSL
VGAIIGIILLKIRKENQPFAFGPYIAIAGWIAFLWGGKIMTAYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=941055 V5M36_RS01615 WP_338561334.1 364585..365445(-) (pilD) [Acinetobacter sp. KS-LM10]
ATGAACGAGCTTATTCACTATTTAATTCAAACACCTATCGCACTCTACCTTGTGGTGGGCGTGGTGTCGCTCTGTATCGG
TAGTTTTTTAAATGTCGTGATTTACCGAACGCCAAAGATGATGGAACAGGAATGGCAGCAAGAATGCACCATGCTGTTAC
ACCCTGAACAAGCCATTATTGATGAATCCAAACTAACATTAAGTCAACCCGCTTCTACATGCCCACAATGTAAAACCAAA
ATTGGTTGGTTCCAGAATATTCCGGTCATCAGTTGGCTTTTTCTCAAAGGCAAATGTGGATCTTGTGAAAACCCAATTGG
CATTCGCTATCCTTTGATCGAACTTCTTACAGCAGTGAGCTCATTGATGGTCGTTGCGGTTTATGGCCCAAGCATTCAAA
TGCTGTTCGGTCTCATTTTAACGTGGATGTTAATTGCACTCACGTTTATCGATTTTGATACGCAACTTCTCCCCGATCGA
TATACACTAACCTTAGCCGGATTAGGTTTAGCGCTCAATAGTTATTCTATTTATGTCTCACCAAGTTCCGCTATCTGGGG
TTATATCATTGGTTTTCTCTGTCTTTGGACAGTGTATTACTTGTTTAAAGTGATTACTGGTAAAGAAGGTATGGGTTATG
GCGACTTTAAACTCCTAGCTGCATTAGGAGCATGGATGGGCCCCCTACTATTGCCTTTGATTGTATTGCTCTCTTCCTTG
GTCGGTGCCATTATTGGTATCATTTTGCTCAAAATCAGAAAAGAGAATCAGCCTTTTGCATTTGGACCCTATATCGCCAT
TGCTGGTTGGATTGCTTTTTTATGGGGTGGAAAGATCATGACGGCTTATCTCGGTGGATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

76.923

100

0.769
  pilD Acinetobacter nosocomialis M2

76.923

100

0.769
  pilD Vibrio cholerae strain A1552

55.639

93.007

0.517
  pilD Vibrio campbellii strain DS40M4

53.184

93.357

0.497
  pilD Neisseria gonorrhoeae MS11

47.17

92.657

0.437