Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   AAEM60_RS21905 Genome accession   NZ_CP145886
Coordinates   4402251..4402628 (-) Length   125 a.a.
NCBI ID   WP_341357166.1    Uniprot ID   -
Organism   Rossellomorea sp. y25     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4397251..4407628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEM60_RS21895 (V2W31_21895) - 4398668..4401493 (+) 2826 WP_341357165.1 DEAD/DEAH box helicase -
  AAEM60_RS21900 (V2W31_21900) - 4402053..4402226 (-) 174 WP_188048404.1 hypothetical protein -
  AAEM60_RS21905 (V2W31_21905) ssbB 4402251..4402628 (-) 378 WP_341357166.1 single-stranded DNA-binding protein Machinery gene
  AAEM60_RS21910 (V2W31_21910) - 4402897..4403337 (+) 441 WP_299744155.1 YwpF-like family protein -
  AAEM60_RS21915 (V2W31_21915) - 4403433..4403753 (+) 321 WP_299744153.1 helix-turn-helix domain-containing protein -
  AAEM60_RS21920 (V2W31_21920) - 4403788..4403925 (-) 138 WP_341357167.1 anti-repressor SinI family protein -
  AAEM60_RS21925 (V2W31_21925) - 4404490..4405185 (-) 696 WP_341357168.1 TasA family protein -
  AAEM60_RS21930 (V2W31_21930) - 4405446..4405775 (+) 330 WP_299744147.1 XRE family transcriptional regulator -
  AAEM60_RS21935 (V2W31_21935) - 4405768..4406361 (+) 594 WP_299744145.1 class D sortase -
  AAEM60_RS21940 (V2W31_21940) - 4406396..4406689 (-) 294 WP_299744140.1 hypothetical protein -
  AAEM60_RS21945 (V2W31_21945) fabZ 4406893..4407327 (-) 435 WP_299744138.1 3-hydroxyacyl-ACP dehydratase FabZ -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14254.18 Da        Isoelectric Point: 9.7402

>NTDB_id=940925 AAEM60_RS21905 WP_341357166.1 4402251..4402628(-) (ssbB) [Rossellomorea sp. y25]
MINQVTIVGRLTKDPEARKTLEGKSILNATIAVNRNYKNQKGQIDTDFVLCTVWNRAADNMEKYCRKGSVVGVTGRIQTR
HYENDQGKRTYVTEVVAENVRFMDSKREPVNASETSKKETIELPF

Nucleotide


Download         Length: 378 bp        

>NTDB_id=940925 AAEM60_RS21905 WP_341357166.1 4402251..4402628(-) (ssbB) [Rossellomorea sp. y25]
TTGATCAACCAAGTGACCATCGTCGGAAGGCTGACCAAAGATCCTGAAGCAAGAAAGACATTGGAAGGAAAATCGATACT
TAACGCTACAATAGCTGTGAATCGCAACTACAAGAATCAAAAAGGCCAAATTGATACAGACTTCGTACTCTGTACCGTTT
GGAACCGGGCTGCAGACAATATGGAGAAATACTGCCGAAAGGGATCTGTCGTTGGAGTGACGGGTCGCATACAAACCCGT
CATTATGAGAATGATCAGGGAAAGCGTACGTATGTAACGGAAGTCGTCGCTGAAAATGTCAGATTTATGGACAGTAAGCG
GGAGCCTGTAAATGCTTCAGAGACAAGCAAGAAAGAAACAATCGAATTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

84.8

0.488
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.667

100

0.44
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.887

84.8

0.44
  ssbB/cilA Streptococcus pneumoniae Rx1

40.152

100

0.424
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.152

100

0.424
  ssbB/cilA Streptococcus pneumoniae D39

40.152

100

0.424
  ssbB/cilA Streptococcus pneumoniae R6

40.152

100

0.424
  ssbB/cilA Streptococcus mitis NCTC 12261

39.394

100

0.416
  ssbB/cilA Streptococcus mitis SK321

39.394

100

0.416
  ssb Latilactobacillus sakei subsp. sakei 23K

47.17

84.8

0.4
  ssbA Streptococcus mutans UA159

37.121

100

0.392