Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   V6U69_RS04620 Genome accession   NZ_CP145867
Coordinates   1020857..1021696 (+) Length   279 a.a.
NCBI ID   WP_410534302.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS10     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1015857..1026696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U69_RS04590 (V6U69_04590) - 1016273..1016800 (+) 528 WP_022496664.1 ECF transporter S component -
  V6U69_RS04595 (V6U69_04595) - 1016823..1017338 (+) 516 WP_037611366.1 transcription repressor NadR -
  V6U69_RS04600 (V6U69_04600) - 1017433..1018122 (+) 690 WP_002883906.1 XRE family transcriptional regulator -
  V6U69_RS04605 (V6U69_04605) ylqF 1018251..1019105 (+) 855 WP_156685098.1 ribosome biogenesis GTPase YlqF -
  V6U69_RS04610 (V6U69_04610) - 1019092..1019859 (+) 768 WP_410534301.1 ribonuclease HII -
  V6U69_RS04615 (V6U69_04615) - 1019870..1020790 (+) 921 WP_060933781.1 ROK family protein -
  V6U69_RS04620 (V6U69_04620) dprA 1020857..1021696 (+) 840 WP_410534302.1 DNA-processing protein DprA Machinery gene
  V6U69_RS04625 (V6U69_04625) topA 1021864..1024008 (+) 2145 WP_110981438.1 type I DNA topoisomerase -
  V6U69_RS04630 (V6U69_04630) - 1024123..1024947 (+) 825 WP_110981437.1 TraX family protein -
  V6U69_RS04635 (V6U69_04635) - 1024983..1025642 (+) 660 WP_110981436.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 31302.30 Da        Isoelectric Point: 8.6658

>NTDB_id=940785 V6U69_RS04620 WP_410534302.1 1020857..1021696(+) (dprA) [Streptococcus salivarius strain KSS10]
MNNFELFKLKAAGLTNLNILNILDYQKTQDRKLSLRDMAVVSKSKNAVLFMEEYKNLDIKQLKENFQRFPTLSIFDKEYP
IELKHSYNPPVLLFYQGNIDLLSKPKLAVVGARKCSEIGKQSVRKIVSELGNHFTIVSGLARGIDTCAHMEALKNKGKTI
AVIGTGLDVYYPKENKALQDYMAKNHLVLSEYGPGEQPLKYHFPERNRIISGLCQGVMVVEAKLRSGSLITCERAMEEGR
DVFAIPGNILDGKSEGCHHLIQEGAKCITTGFDILSEFS

Nucleotide


Download         Length: 840 bp        

>NTDB_id=940785 V6U69_RS04620 WP_410534302.1 1020857..1021696(+) (dprA) [Streptococcus salivarius strain KSS10]
ATGAATAATTTTGAACTTTTTAAACTTAAAGCCGCTGGGTTGACGAATTTGAATATCTTAAATATTTTGGACTATCAAAA
GACTCAAGATAGAAAATTGAGTTTACGTGATATGGCAGTGGTATCCAAGTCTAAAAATGCAGTTCTCTTTATGGAAGAAT
ACAAGAATTTAGATATTAAGCAGCTTAAGGAAAATTTTCAACGTTTTCCGACCTTATCAATTTTTGATAAGGAGTATCCC
ATTGAGCTGAAGCATAGCTATAATCCACCTGTCCTCCTCTTTTATCAAGGGAATATTGATTTGCTAAGTAAACCAAAGCT
AGCTGTTGTTGGGGCAAGAAAGTGCTCCGAAATAGGCAAACAGTCTGTTCGAAAAATTGTTAGTGAACTTGGGAATCACT
TTACTATTGTGAGTGGTTTGGCGCGTGGGATTGATACTTGTGCACATATGGAGGCCTTGAAAAATAAAGGAAAGACCATT
GCAGTTATCGGGACAGGACTTGATGTTTATTATCCAAAAGAAAATAAAGCTTTGCAGGACTATATGGCCAAAAATCATTT
AGTTCTTTCAGAATATGGACCGGGTGAACAGCCACTTAAATACCATTTCCCTGAACGAAATCGGATAATTTCTGGATTGT
GTCAAGGGGTTATGGTGGTTGAAGCTAAGCTTCGCTCGGGAAGTCTGATTACTTGTGAGCGTGCCATGGAAGAAGGTAGA
GATGTTTTTGCTATTCCAGGAAATATTTTAGATGGAAAGTCAGAAGGATGTCATCACTTGATTCAAGAGGGTGCAAAGTG
CATTACGACAGGGTTTGACATCCTTTCAGAGTTTTCTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-269)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

73.118

100

0.731
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

64.029

99.642

0.638
  dprA/cilB/dalA Streptococcus pneumoniae D39

64.029

99.642

0.638
  dprA/cilB/dalA Streptococcus pneumoniae R6

64.029

99.642

0.638
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

64.029

99.642

0.638
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

63.669

99.642

0.634
  dprA/cilB/dalA Streptococcus mitis SK321

63.669

99.642

0.634
  dprA Lactococcus lactis subsp. cremoris KW2

60.791

99.642

0.606
  dprA Acinetobacter baylyi ADP1

43.983

86.38

0.38
  dprA Latilactobacillus sakei subsp. sakei 23K

40.541

92.832

0.376
  dprA Bacillus subtilis subsp. subtilis str. 168

49.048

75.269

0.369
  dprA Haemophilus influenzae Rd KW20

38.258

94.624

0.362
  dprA Staphylococcus aureus N315

41.393

87.455

0.362
  dprA Staphylococcus aureus MW2

41.393

87.455

0.362