Detailed information NTG0940424

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: V6U64_RS00900
• Genome accession: NZ_CP145862
• Coordinates: 167350..167742 (+)
• Length: 130 a.a.
• NCBI ID: WP_129852291.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain KSS4
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 162350..172742

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6U64_RS00865 (V6U64_00865)	pepA	162765..163832 (-)	1068	WP_021152626.1	glutamyl aminopeptidase	-
V6U64_RS00870 (V6U64_00870)	-	163932..164216 (+)	285	WP_037598523.1	DUF4651 domain-containing protein	-
V6U64_RS00875 (V6U64_00875)	-	164213..164527 (+)	315	WP_002887006.1	thioredoxin family protein	-
V6U64_RS00880 (V6U64_00880)	-	164531..165055 (+)	525	WP_022496105.1	hypothetical protein	-
V6U64_RS00885 (V6U64_00885)	ytpR	165087..165710 (+)	624	WP_002885779.1	YtpR family tRNA-binding protein	-
V6U64_RS00890 (V6U64_00890)	-	165848..166879 (+)	1032	WP_021144677.1	YeeE/YedE family protein	-
V6U64_RS00895 (V6U64_00895)	-	166894..167121 (+)	228	WP_003095911.1	sulfurtransferase TusA family protein	-
V6U64_RS00900 (V6U64_00900)	ssbA	167350..167742 (+)	393	WP_129852291.1	single-stranded DNA-binding protein	Machinery gene
V6U64_RS00905 (V6U64_00905)	tadA	168512..169030 (+)	519	WP_014635105.1	tRNA adenosine(34) deaminase TadA	-
V6U64_RS00910 (V6U64_00910)	-	169117..169368 (-)	252	WP_048790864.1	hypothetical protein	-
V6U64_RS00915 (V6U64_00915)	-	169416..169583 (-)	168	WP_002885883.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
V6U64_RS00920 (V6U64_00920)	-	169603..169761 (-)	159	WP_080610964.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
V6U64_RS00930 (V6U64_00930)	-	170182..171021 (+)	840	WP_003092095.1	methyltransferase domain-containing protein	-
V6U64_RS00935 (V6U64_00935)	-	171135..171887 (+)	753	WP_003092016.1	HAD family hydrolase	-
V6U64_RS00940 (V6U64_00940)	dapD	171973..172671 (+)	699	WP_002886999.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	-

Sequence

Protein

• Length: 130 a.a.
• Molecular weight: 14729.64 Da
• Isoelectric Point: 5.9275

>NTDB_id=940424 V6U64_RS00900 WP_129852291.1 167350..167742(+) (ssbA) [Streptococcus salivarius strain KSS4]
MYNKVILIGRLTATPEMVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLAETLASYASKGSLISLDGELRAR
KYDKDGQTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLVLEEELPF

Nucleotide

• Length: 393 bp

>NTDB_id=940424 V6U64_RS00900 WP_129852291.1 167350..167742(+) (ssbA) [Streptococcus salivarius strain KSS4]
ATGTATAACAAAGTAATTTTAATTGGACGTTTGACAGCTACTCCTGAAATGGTTAAGACTGCTAGCGATAGGTCTTTTAC
ACGTGTCACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGACTTTATTACAGTGGTTGTCT
GGGGGCGTTTGGCTGAGACCTTAGCCTCTTATGCTAGCAAGGGGAGTTTAATTTCTCTTGATGGTGAGCTTCGTGCCCGT
AAGTATGATAAGGATGGTCAAACCCATTACGTTACTGAAGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA
GCGTGCTGTTAGGGAAAATAATCCTGATAATGACTTGGCTGACCTCGTCTTGGAAGAAGAACTTCCCTTCTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-102)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	80.153	100	0.808
ssbB/cilA	Streptococcus pneumoniae TIGR4	75.573	100	0.762
ssbB	Streptococcus sobrinus strain NIDR 6715-7	75.573	100	0.762
ssbB/cilA	Streptococcus mitis SK321	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae R6	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae Rx1	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae D39	74.809	100	0.754
ssbB/cilA	Streptococcus mitis NCTC 12261	73.282	100	0.738
ssbB	Lactococcus lactis subsp. cremoris KW2	60.714	86.154	0.523
ssbA	Bacillus subtilis subsp. subtilis str. 168	47.17	81.538	0.385
ssb	Latilactobacillus sakei subsp. sakei 23K	46.226	81.538	0.377