Detailed information NTG0940291

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: V6U62_RS00860
• Genome accession: NZ_CP145860
• Coordinates: 161171..161563 (+)
• Length: 130 a.a.
• NCBI ID: WP_227071972.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain KSS2
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 156171..166563

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6U62_RS00830 (V6U62_00825)	pepA	156854..157921 (-)	1068	WP_002887007.1	glutamyl aminopeptidase	-
V6U62_RS00835 (V6U62_00830)	-	158021..158305 (+)	285	WP_227071974.1	DUF4651 domain-containing protein	-
V6U62_RS00840 (V6U62_00835)	-	158302..158616 (+)	315	WP_002887006.1	thioredoxin family protein	-
V6U62_RS00845 (V6U62_00840)	-	158620..159144 (+)	525	WP_002885713.1	hypothetical protein	-
V6U62_RS00850 (V6U62_00845)	ytpR	159176..159799 (+)	624	WP_002885779.1	YtpR family tRNA-binding protein	-
V6U62_RS00855 (V6U62_00850)	-	160065..160742 (+)	678	Protein_164	CPBP family intramembrane glutamic endopeptidase	-
V6U62_RS00860 (V6U62_00855)	ssbA	161171..161563 (+)	393	WP_227071972.1	single-stranded DNA-binding protein	Machinery gene
V6U62_RS00865 (V6U62_00860)	tadA	162323..162841 (+)	519	WP_049553956.1	tRNA adenosine(34) deaminase TadA	-
V6U62_RS00870 (V6U62_00865)	-	162926..163180 (-)	255	WP_410535059.1	hypothetical protein	-
V6U62_RS00875 (V6U62_00870)	-	163228..163395 (-)	168	WP_002885883.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
V6U62_RS00880 (V6U62_00875)	-	163415..163573 (-)	159	WP_002885650.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
V6U62_RS00890 (V6U62_00885)	-	163995..164834 (+)	840	WP_048674205.1	methyltransferase domain-containing protein	-
V6U62_RS00895 (V6U62_00890)	-	164947..165699 (+)	753	WP_410535057.1	HAD family hydrolase	-
V6U62_RS00900 (V6U62_00895)	dapD	165785..166483 (+)	699	WP_002886999.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	-

Sequence

Protein

• Length: 130 a.a.
• Molecular weight: 14754.63 Da
• Isoelectric Point: 5.9275

>NTDB_id=940291 V6U62_RS00860 WP_227071972.1 161171..161563(+) (ssbA) [Streptococcus salivarius strain KSS2]
MYNKVILIGRLTANPEIVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLAETLASYASKGSLISLDGELRTR
KYDKDGQTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLVLEEELPF

Nucleotide

• Length: 393 bp

>NTDB_id=940291 V6U62_RS00860 WP_227071972.1 161171..161563(+) (ssbA) [Streptococcus salivarius strain KSS2]
ATGTATAACAAAGTTATTTTAATTGGACGTTTGACGGCGAATCCTGAAATAGTAAAAACTGCTAGTGATAGGTCTTTTAC
ACGTGTCACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGACTTTATTACAGTGGTTGTCT
GGGGGCGTTTGGCTGAGACCTTAGCATCTTATGCTAGCAAGGGGAGTTTAATTTCTCTTGATGGTGAGCTTCGTACCCGT
AAGTACGATAAGGATGGTCAAACCCATTACGTTACTGAAGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA
GCGTGCTGTTAGGGAAAATAATCCTGATAATGACTTGGCTGACCTCGTCTTGGAAGAAGAACTTCCCTTCTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-102)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	79.389	100	0.8
ssbB/cilA	Streptococcus pneumoniae TIGR4	75.573	100	0.762
ssbB	Streptococcus sobrinus strain NIDR 6715-7	75.573	100	0.762
ssbB/cilA	Streptococcus mitis SK321	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae R6	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae Rx1	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae D39	74.809	100	0.754
ssbB/cilA	Streptococcus mitis NCTC 12261	73.282	100	0.738
ssbB	Lactococcus lactis subsp. cremoris KW2	62.5	86.154	0.538
ssbA	Bacillus subtilis subsp. subtilis str. 168	48.113	81.538	0.392
ssb	Latilactobacillus sakei subsp. sakei 23K	47.17	81.538	0.385