NTDB

Overview

Name	ssbB/cilA	Type	Machinery gene
Locus tag	ACE2AN_RS08750	Genome accession	NZ_CP169564
Coordinates	1735038..1735433 (-)	Length	131 a.a.
NCBI ID	WP_000282467.1	Uniprot ID	Q8DNH4
Organism	Streptococcus pneumoniae strain 6_2F1
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1730038..1740433

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACE2AN_RS08725	-	1730266..1730799 (+)	534	WP_000775321.1	DUF402 domain-containing protein	-
ACE2AN_RS08730	-	1731153..1731359 (-)	207	WP_000775827.1	transcriptional regulator	-
ACE2AN_RS08735	-	1731518..1732747 (+)	1230	WP_279514573.1	ISL3 family transposase	-
ACE2AN_RS08740	groL	1732846..1734468 (-)	1623	WP_000031585.1	chaperonin GroEL	-
ACE2AN_RS08745	groES	1734484..1734768 (-)	285	WP_000917330.1	co-chaperone GroES	-
ACE2AN_RS08750	ssbB/cilA	1735038..1735433 (-)	396	WP_000282467.1	single-stranded DNA-binding protein	Machinery gene
ACE2AN_RS08755	-	1735510..1736271 (-)	762	WP_001107755.1	SDR family NAD(P)-dependent oxidoreductase	-
ACE2AN_RS08760	ytpR	1736304..1736930 (-)	627	WP_000578309.1	YtpR family tRNA-binding protein	-
ACE2AN_RS08765	-	1736946..1737263 (-)	318	WP_000615767.1	thioredoxin family protein	-
ACE2AN_RS08770	-	1737260..1737559 (-)	300	WP_001013974.1	DUF4651 domain-containing protein	-
ACE2AN_RS08775	-	1737757..1737954 (-)	198	Protein_1715	N-acetylmuramoyl-L-alanine amidase family protein	-
ACE2AN_RS08780	-	1738196..1738870 (-)	675	WP_044813801.1	membrane protein	-
ACE2AN_RS08785	-	1738875..1739321 (-)	447	WP_044813800.1	LytTR family DNA-binding domain-containing protein	-
ACE2AN_RS08790	-	1739435..1739938 (-)	504	WP_000800923.1	phosphatase PAP2 family protein	-
ACE2AN_RS08795	-	1739935..1740297 (-)	363	WP_000078805.1	DUF2200 domain-containing protein	-

Sequence

Protein

Download Length: 131 a.a. Molecular weight: 14925.89 Da Isoelectric Point: 5.9409

                                >NTDB_id=939601 ACE2AN_RS08750 WP_000282467.1 1735038..1735433(-) (ssbB/cilA) [Streptococcus pneumoniae strain 6_2F1]

MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR

RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide

Download Length: 396 bp

                                >NTDB_id=939601 ACE2AN_RS08750 WP_000282467.1 1735038..1735433(-) (ssbB/cilA) [Streptococcus pneumoniae strain 6_2F1]

ATGTATAATAAAGTTATCATGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGC

GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTCCTAT

GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT

CGCTTTGAGAAAAATGGTCAGATGAACTATGTAACCGAAGTCCTTGTAACAGGATTCCAACTCTTGGAAAGTCGTGCTCA

ACGTGCCATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-101)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	Q8DNH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbB/cilA	Streptococcus pneumoniae D39	100	100	1
ssbB/cilA	Streptococcus pneumoniae Rx1	100	100	1
ssbB/cilA	Streptococcus pneumoniae R6	100	100	1
ssbB/cilA	Streptococcus pneumoniae TIGR4	99.237	100	0.992
ssbB/cilA	Streptococcus mitis SK321	98.473	100	0.985
ssbB/cilA	Streptococcus mitis NCTC 12261	98.473	100	0.985
ssbA	Streptococcus mutans UA159	74.809	100	0.748
ssbB	Streptococcus sobrinus strain NIDR 6715-7	70.229	100	0.702
ssbB	Lactococcus lactis subsp. cremoris KW2	59.821	85.496	0.511
ssbA	Bacillus subtilis subsp. subtilis str. 168	50.943	80.916	0.412
ssb	Latilactobacillus sakei subsp. sakei 23K	46.903	86.26	0.405

Detailed information NTG0939601