Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   V6C68_RS09555 Genome accession   NZ_CP145228
Coordinates   1967052..1967465 (-) Length   137 a.a.
NCBI ID   WP_049399325.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. urealyticus strain Sc1365695     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1962052..1972465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C68_RS09495 (V6C68_09480) dut 1962127..1962552 (-) 426 WP_049388193.1 dUTP diphosphatase -
  V6C68_RS09500 (V6C68_09485) - 1962554..1962751 (-) 198 WP_023350541.1 hypothetical protein -
  V6C68_RS09505 (V6C68_09490) - 1962735..1963289 (-) 555 WP_023350542.1 nucleoside 2-deoxyribosyltransferase -
  V6C68_RS09510 (V6C68_09495) - 1963292..1963489 (-) 198 WP_023350543.1 hypothetical protein -
  V6C68_RS09515 (V6C68_09500) - 1963490..1963837 (-) 348 WP_023350544.1 SA1788 family PVL leukocidin-associated protein -
  V6C68_RS09520 (V6C68_09505) - 1963838..1964029 (-) 192 WP_023350545.1 hypothetical protein -
  V6C68_RS09525 (V6C68_09510) - 1964019..1964429 (-) 411 WP_367027653.1 DUF1064 domain-containing protein -
  V6C68_RS09530 (V6C68_09515) - 1964438..1964683 (-) 246 WP_002469995.1 DUF3269 family protein -
  V6C68_RS09535 (V6C68_09520) - 1964686..1964841 (-) 156 WP_002469952.1 hypothetical protein -
  V6C68_RS09540 (V6C68_09525) - 1964835..1965596 (-) 762 WP_227707438.1 ATP-binding protein -
  V6C68_RS09545 (V6C68_09530) - 1965616..1966371 (-) 756 WP_037560596.1 conserved phage C-terminal domain-containing protein -
  V6C68_RS09550 (V6C68_09535) - 1966358..1967038 (-) 681 WP_023350548.1 putative HNHc nuclease -
  V6C68_RS09555 (V6C68_09540) ssbA 1967052..1967465 (-) 414 WP_049399325.1 single-stranded DNA-binding protein Machinery gene
  V6C68_RS09560 (V6C68_09545) - 1967458..1968111 (-) 654 WP_023350550.1 ERF family protein -
  V6C68_RS09565 (V6C68_09550) - 1968104..1968325 (-) 222 WP_023350551.1 DUF2483 family protein -
  V6C68_RS09570 (V6C68_09555) - 1968291..1968572 (-) 282 WP_023350552.1 hypothetical protein -
  V6C68_RS09575 (V6C68_09560) - 1968594..1968812 (-) 219 WP_023350553.1 hypothetical protein -
  V6C68_RS09580 (V6C68_09565) - 1969290..1969502 (-) 213 WP_002436465.1 DUF771 domain-containing protein -
  V6C68_RS09585 (V6C68_09570) - 1969506..1969673 (-) 168 WP_023350555.1 hypothetical protein -
  V6C68_RS09590 (V6C68_09575) - 1969775..1969969 (-) 195 WP_023350556.1 hypothetical protein -
  V6C68_RS09595 (V6C68_09580) - 1970052..1970228 (+) 177 WP_023350557.1 hypothetical protein -
  V6C68_RS09600 (V6C68_09585) - 1970254..1970352 (-) 99 Protein_1855 hypothetical protein -
  V6C68_RS09605 (V6C68_09590) - 1970442..1970618 (-) 177 WP_023350559.1 hypothetical protein -
  V6C68_RS09610 (V6C68_09595) - 1970701..1971468 (-) 768 WP_160312606.1 DUF6551 family protein -
  V6C68_RS09615 (V6C68_09600) - 1971468..1972424 (-) 957 WP_049307539.1 ParB N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15558.23 Da        Isoelectric Point: 8.5209

>NTDB_id=937977 V6C68_RS09555 WP_049399325.1 1967052..1967465(-) (ssbA) [Staphylococcus capitis subsp. urealyticus strain Sc1365695]
MINRFIGVGRLTKDPEFRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQADNVNKFLTKGSLAGVEGRIQTR
SYENNEGRRIFVTKVVCDSVQFLDTKNNNGNNNRQQTEQTQQEKPFDNGNDFPDLPF

Nucleotide


Download         Length: 414 bp        

>NTDB_id=937977 V6C68_RS09555 WP_049399325.1 1967052..1967465(-) (ssbA) [Staphylococcus capitis subsp. urealyticus strain Sc1365695]
ATGATTAATCGTTTTATAGGTGTAGGAAGATTAACAAAAGATCCAGAATTCAGAACAACGCCAAATGGTGTCAGTGTGAC
AACTTTTACAATCGCAGTGAATAGAACGTTCACTAATGCTCAAGGAGAGCGTGAGGCTGATTTTATTAACTGTGTAACGT
TCAGAAAACAAGCTGATAACGTAAATAAGTTTTTAACAAAAGGGTCACTTGCAGGCGTTGAAGGTCGCATTCAAACGCGT
AGTTACGAAAACAATGAAGGTAGACGCATTTTTGTCACTAAGGTTGTGTGTGATAGCGTTCAGTTTTTAGATACAAAAAA
TAACAACGGAAATAATAACCGACAACAAACAGAACAAACGCAACAAGAGAAACCATTTGATAATGGCAACGATTTTCCTG
ACCTTCCTTTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.028

78.102

0.555
  ssb Latilactobacillus sakei subsp. sakei 23K

57.547

77.372

0.445
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.66

77.372

0.431
  ssbB Streptococcus sobrinus strain NIDR 6715-7

39.394

96.35

0.38
  ssbB/cilA Streptococcus mitis NCTC 12261

39.394

96.35

0.38
  ssbB/cilA Streptococcus pneumoniae R6

38.636

96.35

0.372
  ssbB/cilA Streptococcus pneumoniae Rx1

38.636

96.35

0.372
  ssbB/cilA Streptococcus pneumoniae D39

38.636

96.35

0.372
  ssbB/cilA Streptococcus pneumoniae TIGR4

38.636

96.35

0.372
  ssbB/cilA Streptococcus mitis SK321

37.879

96.35

0.365
  ssbA Streptococcus mutans UA159

37.879

96.35

0.365