Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   R8947_RS02055 Genome accession   NZ_AP028371
Coordinates   419120..420130 (-) Length   336 a.a.
NCBI ID   WP_004283528.1    Uniprot ID   -
Organism   Campylobacter coli strain BCH-10879     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 414120..425130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8947_RS02040 (B10879_04040) glmS 414698..416494 (+) 1797 WP_002777801.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  R8947_RS02045 (B10879_04050) fumC 416629..418020 (+) 1392 WP_002777799.1 class II fumarate hydratase -
  R8947_RS02050 (B10879_04060) - 418067..419110 (-) 1044 WP_002789620.1 AI-2E family transporter -
  R8947_RS02055 (B10879_04070) ruvB 419120..420130 (-) 1011 WP_004283528.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  R8947_RS02060 (B10879_04080) - 420221..420631 (+) 411 WP_002783915.1 hypothetical protein -
  R8947_RS02070 (B10879_04090) - 421195..423462 (+) 2268 WP_004283547.1 autotransporter domain-containing protein -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37541.98 Da        Isoelectric Point: 4.7834

>NTDB_id=93763 R8947_RS02055 WP_004283528.1 419120..420130(-) (ruvB) [Campylobacter coli strain BCH-10879]
MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGANI
KTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
AGMLSNPLRDRFGMQFRLEFYKDEELAIILQKAALKLNKSCENEAALEIAKRSRSTPRIALRLLKRVRDFADVNDEETIT
KERAKEALNSLGVNELGFDAMDLRYLELLTEAKRKPIGLSSIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASTKS
FSVLKLNYEQTLFDEN

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=93763 R8947_RS02055 WP_004283528.1 419120..420130(-) (ruvB) [Campylobacter coli strain BCH-10879]
ATGGATAGAATAGTAGAAATAGAAAAATACTCCTTTGATGAAACTTACGAAACTTCGTTGCGTCCTTCAAATTTTGATGG
TTATATAGGTCAAGAAAGCATTAAAAAAAATTTAAATGTCTTTATAGCTGCAGCTAAAAAACGCAATGAATGTTTAGATC
ATATACTTTTTAGCGGTCCTGCAGGACTTGGAAAAACAACACTAGCTAATATCATCTCCTATGAAATGGGTGCAAATATC
AAAACAACCGCCGCTCCTATGATAGAAAAAAGCGGAGATTTAGCAGCCATTTTAACCAATCTTAGCGAAGGAGATATACT
TTTTATCGATGAAATTCATCGCTTAAGCCCTGCTATTGAAGAAGTACTTTACCCTGCAATGGAAGATTATAGGCTAGATA
TCATCATCGGTAGTGGCCCTGCAGCACAAACTATAAAAATCGATTTGCCTAAATTTACACTTATTGGCGCTACAACCCGT
GCAGGAATGCTTAGCAATCCTTTAAGAGATCGTTTTGGAATGCAATTTAGACTTGAATTTTATAAAGATGAAGAGCTTGC
TATCATACTTCAAAAAGCTGCACTAAAGCTCAATAAAAGCTGTGAAAATGAAGCTGCACTTGAGATTGCCAAAAGAAGTC
GCTCTACCCCTAGAATCGCACTTAGACTTTTAAAAAGAGTGAGAGATTTTGCAGATGTAAATGACGAAGAAACGATCACC
AAAGAAAGGGCTAAAGAAGCATTAAATTCTTTAGGTGTCAATGAGCTTGGTTTTGATGCGATGGATTTAAGATATCTAGA
GCTTTTAACAGAGGCTAAAAGAAAGCCTATAGGACTTTCTAGTATAGCGGCAGCTTTGAGTGAAGATGAAAATACTATTG
AAGATGTAATCGAACCTTATTTGCTTGCAAATGGCTACATAGAACGCACTGCCAAAGGTCGTATAGCAAGTACAAAAAGT
TTTAGTGTACTTAAGCTTAATTACGAACAAACTTTATTTGATGAAAATTGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(255-325)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)

RuvB AAA lid domain (AAA_lid_4)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

69.162

99.405

0.688
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.067

97.024

0.515
  ruvB Streptococcus pneumoniae TIGR4

48.036

98.512

0.473
  ruvB Streptococcus pneumoniae R6

48.036

98.512

0.473
  ruvB Streptococcus pneumoniae D39

48.036

98.512

0.473
  ruvB Synechocystis sp. PCC 6803

50.159

93.75

0.47

Multiple sequence alignment