Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   LLID5_RS11045 Genome accession   NZ_AP025701
Coordinates   2285150..2286169 (-) Length   339 a.a.
NCBI ID   WP_251918767.1    Uniprot ID   -
Organism   Lactococcus lactis strain ID-5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2280150..2291169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLID5_RS11000 (LLID5_21650) - 2280289..2281098 (-) 810 WP_014570791.1 metal ABC transporter permease -
  LLID5_RS11005 (LLID5_21660) - 2281091..2281828 (-) 738 WP_012898617.1 metal ABC transporter ATP-binding protein -
  LLID5_RS11010 (LLID5_21670) - 2282005..2282847 (-) 843 WP_015427160.1 metal ABC transporter substrate-binding protein -
  LLID5_RS11015 (LLID5_21680) - 2282844..2283281 (-) 438 WP_251918765.1 zinc-dependent MarR family transcriptional regulator -
  LLID5_RS11020 (LLID5_21690) comGG 2283362..2283646 (-) 285 WP_017865155.1 competence type IV pilus minor pilin ComGG Machinery gene
  LLID5_RS11025 (LLID5_21700) comGF 2283685..2284110 (-) 426 WP_161935022.1 competence type IV pilus minor pilin ComGF Machinery gene
  LLID5_RS11030 (LLID5_21710) comGE 2284094..2284390 (-) 297 WP_033900709.1 competence type IV pilus minor pilin ComGE Machinery gene
  LLID5_RS11035 (LLID5_21720) comGD 2284362..2284793 (-) 432 WP_012898621.1 competence type IV pilus minor pilin ComGD Machinery gene
  LLID5_RS11040 (LLID5_21730) comGC 2284753..2285136 (-) 384 WP_012898622.1 competence type IV pilus major pilin ComGC Machinery gene
  LLID5_RS11045 (LLID5_21740) comGB 2285150..2286169 (-) 1020 WP_251918767.1 competence type IV pilus assembly protein ComGB Machinery gene
  LLID5_RS11050 (LLID5_21750) comGA 2286117..2287055 (-) 939 WP_033900707.1 competence type IV pilus ATPase ComGA Machinery gene

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 38257.02 Da        Isoelectric Point: 10.2447

>NTDB_id=93762 LLID5_RS11045 WP_251918767.1 2285150..2286169(-) (comGB) [Lactococcus lactis strain ID-5]
MDISHLLKPKGKKLRLIKQAKLIQLMGNLLNSGFNLGEVINFLSLSKLVEKEFTLKMKEGLASGQALSELLESLSFSKNV
VTQLALVEVHGNLSGTMQLVELHLKKKLKVKNKLVEVATYPILLLIFLVGIMWGLKNYLLPQLNSGSNFATLLINHLPLV
FFSFGAFIFLLTALSVTLLKRKSAIMNFTFLVKLPLVHSFIRLYLTAYFAREWGNLIAQGVELRQIINLMKKQKSRIFSE
VGKNLDLELNAGRSFEQAVSKLALFLPELSLMIEYGAIKDKLGLELSLYADECWEQFFTKIDRLMQLIQPLVFIFVALMI
ILLYAAMLLPIYSNMGSGI

Nucleotide


Download         Length: 1020 bp        

>NTDB_id=93762 LLID5_RS11045 WP_251918767.1 2285150..2286169(-) (comGB) [Lactococcus lactis strain ID-5]
ATGGATATCTCACACCTACTGAAGCCAAAAGGGAAAAAATTAAGACTGATTAAACAAGCCAAACTTATCCAACTGATGGG
AAATCTTTTGAATAGTGGATTTAATTTAGGAGAAGTGATAAATTTCTTATCTTTATCAAAACTTGTGGAAAAAGAATTTA
CATTAAAAATGAAAGAAGGTCTCGCTTCTGGTCAAGCTTTATCAGAGCTTTTAGAAAGTCTTTCATTTTCTAAAAATGTG
GTGACACAACTTGCTTTGGTAGAAGTGCATGGTAACTTGTCAGGGACGATGCAATTAGTTGAACTTCATCTAAAAAAAAA
GCTTAAAGTTAAAAATAAATTAGTGGAAGTTGCTACTTATCCAATATTGTTATTAATTTTTCTGGTTGGAATTATGTGGG
GCTTAAAAAATTATTTACTACCACAACTCAATAGTGGCAGTAACTTTGCTACTCTATTGATTAATCATTTACCCTTAGTA
TTTTTTTCGTTTGGAGCTTTTATATTTTTACTGACAGCTTTGTCAGTAACTCTTTTAAAACGAAAATCAGCAATAATGAA
TTTTACATTTCTTGTTAAATTACCTCTGGTTCATTCTTTTATCCGTTTATATTTAACAGCTTACTTTGCAAGAGAATGGG
GAAATCTAATTGCTCAAGGTGTTGAATTACGTCAAATTATTAACTTGATGAAAAAACAAAAAAGTCGAATTTTTTCAGAA
GTTGGCAAGAATCTTGATTTAGAATTGAATGCTGGTCGGTCTTTTGAACAAGCTGTCAGTAAACTTGCGCTTTTTTTACC
CGAGCTCTCGTTAATGATTGAATATGGAGCTATTAAAGATAAATTAGGCTTAGAGCTTTCGCTTTATGCGGATGAATGTT
GGGAACAATTTTTTACAAAGATAGATCGTTTAATGCAATTAATCCAACCTCTTGTTTTTATTTTTGTAGCATTGATGATT
ATTTTGCTATATGCAGCCATGTTACTCCCCATCTATTCAAATATGGGTTCGGGAATATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(23-141)

Type II secretion system (T2SS), protein F (T2SSF)

(209-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Lactococcus lactis subsp. cremoris KW2

83.432

99.705

0.832
  comYB Streptococcus gordonii str. Challis substr. CH1

53.593

98.525

0.528
  comGB/cglB Streptococcus mitis SK321

51.343

98.82

0.507
  comGB/cglB Streptococcus pneumoniae TIGR4

51.045

98.82

0.504
  comGB/cglB Streptococcus pneumoniae Rx1

51.045

98.82

0.504
  comGB/cglB Streptococcus pneumoniae D39

51.045

98.82

0.504
  comGB/cglB Streptococcus pneumoniae R6

51.045

98.82

0.504
  comGB/cglB Streptococcus mitis NCTC 12261

50.448

98.82

0.499
  comYB Streptococcus mutans UA140

52.866

92.625

0.49
  comYB Streptococcus mutans UA159

52.548

92.625

0.487

Multiple sequence alignment