Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | LLID5_RS01815 | Genome accession | NZ_AP025701 |
| Coordinates | 369355..369744 (+) | Length | 129 a.a. |
| NCBI ID | WP_010905314.1 | Uniprot ID | S6EQX8 |
| Organism | Lactococcus lactis strain ID-5 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 364355..374744
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLID5_RS01790 (LLID5_03460) | pepA | 365237..366304 (-) | 1068 | WP_058212015.1 | glutamyl aminopeptidase | - |
| LLID5_RS01795 (LLID5_03470) | - | 366407..366691 (+) | 285 | WP_012897223.1 | hypothetical protein | - |
| LLID5_RS01800 (LLID5_03480) | - | 366733..367050 (+) | 318 | WP_003131595.1 | thioredoxin family protein | - |
| LLID5_RS01805 (LLID5_03490) | ytpR | 367136..367762 (+) | 627 | WP_003131594.1 | YtpR family tRNA-binding protein | - |
| LLID5_RS01810 (LLID5_03500) | - | 367925..369265 (+) | 1341 | WP_023188995.1 | H2O-forming NADH oxidase | - |
| LLID5_RS01815 (LLID5_03510) | ssbB | 369355..369744 (+) | 390 | WP_010905314.1 | single-stranded DNA-binding protein | Machinery gene |
| LLID5_RS01820 (LLID5_03520) | groES | 369864..370148 (+) | 285 | WP_003131589.1 | co-chaperone GroES | - |
| LLID5_RS01825 (LLID5_03530) | groL | 370236..371864 (+) | 1629 | WP_003131585.1 | chaperonin GroEL | - |
| LLID5_RS01830 (LLID5_03540) | - | 371911..372723 (-) | 813 | WP_003131583.1 | MBL fold metallo-hydrolase | - |
| LLID5_RS01835 (LLID5_03550) | - | 372892..374334 (-) | 1443 | WP_010905315.1 | cell wall metabolism sensor histidine kinase WalK | - |
Sequence
Protein
Download Length: 129 a.a. Molecular weight: 14672.73 Da Isoelectric Point: 8.3705
>NTDB_id=93728 LLID5_RS01815 WP_010905314.1 369355..369744(+) (ssbB) [Lactococcus lactis strain ID-5]
MNKTMLIGRLTSAPEISKTTNDKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YTDKQNQKHYVTEILGLSYDLLESRATIALRESAIKTEETLLDAEELPF
MNKTMLIGRLTSAPEISKTTNDKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YTDKQNQKHYVTEILGLSYDLLESRATIALRESAIKTEETLLDAEELPF
Nucleotide
Download Length: 390 bp
>NTDB_id=93728 LLID5_RS01815 WP_010905314.1 369355..369744(+) (ssbB) [Lactococcus lactis strain ID-5]
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGCCAGAAATTTCAAAAACAACAAATGATAAATCATATGTCCG
TGTGACCTTAGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAACGAGAGGCAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTAGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCGATTGAAGGGGAAATTAGAACTAGAAAT
TATACGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGAGAAAGCGCTATAAAGACTGAAGAAACCTTACTTGATGCGGAAGAACTCCCTTTCTAA
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGCCAGAAATTTCAAAAACAACAAATGATAAATCATATGTCCG
TGTGACCTTAGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAACGAGAGGCAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTAGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCGATTGAAGGGGAAATTAGAACTAGAAAT
TATACGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGAGAAAGCGCTATAAAGACTGAAGAAACCTTACTTGATGCGGAAGAACTCCCTTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
90.698 |
100 |
0.907 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
60.769 |
100 |
0.612 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
56.923 |
100 |
0.574 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus mitis SK321 |
56.154 |
100 |
0.566 |
| ssbA | Streptococcus mutans UA159 |
55.385 |
100 |
0.558 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
43.75 |
86.822 |
0.38 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
44.762 |
81.395 |
0.364 |