Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   V3H56_RS23100 Genome accession   NZ_CP144763
Coordinates   5241396..5242613 (+) Length   405 a.a.
NCBI ID   WP_042730993.1    Uniprot ID   A0A0D0PBV4
Organism   Pseudomonas sp. MS646     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5236396..5247613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3H56_RS23080 (V3H56_23080) - 5237875..5238171 (+) 297 WP_042730997.1 DUF2845 domain-containing protein -
  V3H56_RS23085 (V3H56_23085) - 5238437..5238790 (-) 354 WP_042730996.1 BON domain-containing protein -
  V3H56_RS23090 (V3H56_23090) - 5239055..5239462 (-) 408 WP_042730995.1 pilin -
  V3H56_RS23095 (V3H56_23095) pilB 5239693..5241393 (+) 1701 WP_338473906.1 type IV-A pilus assembly ATPase PilB Machinery gene
  V3H56_RS23100 (V3H56_23100) pilC 5241396..5242613 (+) 1218 WP_042730993.1 type II secretion system F family protein Machinery gene
  V3H56_RS23105 (V3H56_23105) pilD 5242615..5243484 (+) 870 WP_042730992.1 A24 family peptidase Machinery gene
  V3H56_RS23110 (V3H56_23110) coaE 5243497..5244120 (+) 624 WP_338473907.1 dephospho-CoA kinase -
  V3H56_RS23115 (V3H56_23115) yacG 5244117..5244323 (+) 207 WP_042730990.1 DNA gyrase inhibitor YacG -
  V3H56_RS23120 (V3H56_23120) - 5244320..5244535 (-) 216 WP_042730989.1 hypothetical protein -
  V3H56_RS23125 (V3H56_23125) - 5244599..5245285 (-) 687 WP_042730988.1 energy-coupling factor ABC transporter permease -
  V3H56_RS23130 (V3H56_23130) - 5245453..5246079 (+) 627 WP_003185538.1 DUF1780 domain-containing protein -
  V3H56_RS23135 (V3H56_23135) - 5246201..5246374 (+) 174 WP_003185543.1 DUF3094 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44368.31 Da        Isoelectric Point: 9.9932

>NTDB_id=934809 V3H56_RS23100 WP_042730993.1 5241396..5242613(+) (pilC) [Pseudomonas sp. MS646]
MAVKAVKTDVYTWEGKDRKGTRMTGELTGQSTALVKAQLRKQGINPQKVRKKTSSIFSKGKRIKPLDIALFTRQMATMLK
AGVPLLQAFDIIGEGFDNPNMRKLVDEVKQEVAAGNSFAAALRKCPQYFDELYCNLVDAGEQAGALDTLLDRIATYKEKT
EALKAKIKKAMTYPAAVVLVAAVVTGILLVKVVPQFESVFSGFGAQLPAFTLMVIGLSEFMQRYWWLILALLVGLFFGVK
YALKRSAALRDWRDKWMLKLPLIGTLMYKTAVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFKQAVQRIKQDVSTGM
QLNFSMRASGIFPNLAIQMTAIGEESGALDDMLDKVASFYEAEVDNLVDNLTSLMEPFIMVILGLVVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=934809 V3H56_RS23100 WP_042730993.1 5241396..5242613(+) (pilC) [Pseudomonas sp. MS646]
ATGGCGGTCAAGGCAGTCAAAACCGATGTTTACACCTGGGAAGGCAAGGACCGCAAAGGCACGAGGATGACCGGCGAGCT
GACGGGGCAGAGCACCGCCCTGGTCAAGGCCCAGTTACGCAAGCAAGGCATCAACCCGCAGAAGGTGCGCAAGAAGACCT
CTTCGATCTTCAGCAAGGGCAAGCGCATCAAGCCGTTGGACATCGCCCTCTTCACTCGCCAGATGGCCACGATGCTCAAG
GCCGGCGTGCCGCTGTTGCAGGCGTTCGACATCATTGGCGAGGGCTTCGACAACCCCAACATGCGCAAGCTGGTGGACGA
GGTGAAGCAGGAAGTCGCGGCCGGCAACAGCTTCGCCGCGGCACTGCGCAAATGCCCGCAGTATTTTGACGAGCTGTACT
GCAACCTGGTGGATGCCGGCGAACAGGCCGGCGCCCTGGACACGCTGCTGGACCGGATCGCGACCTACAAGGAAAAGACC
GAGGCGCTCAAGGCCAAGATCAAGAAGGCCATGACCTACCCGGCGGCCGTGGTGCTCGTCGCGGCCGTGGTCACCGGCAT
CCTGCTGGTCAAGGTGGTGCCCCAGTTCGAGTCGGTGTTCTCCGGCTTCGGCGCGCAATTGCCGGCCTTCACGCTAATGG
TCATCGGCCTGTCGGAGTTCATGCAGCGCTATTGGTGGCTGATACTGGCCCTGTTGGTCGGCCTGTTCTTTGGTGTGAAG
TACGCCCTCAAGCGCTCCGCGGCGCTGCGTGACTGGCGCGATAAATGGATGCTGAAGCTGCCGCTGATCGGCACGCTGAT
GTACAAGACCGCCGTGGCCCGCTACGCCCGCACGCTGTCCACCACCTTCGCCGCGGGCGTCCCGTTGGTGGAGGCCCTGG
ATTCGGTTTCCGGCGCCACCGGCAACGTGGTGTTCAAGCAAGCGGTGCAACGCATCAAGCAGGACGTCTCGACCGGCATG
CAATTGAATTTCTCCATGCGCGCTTCCGGCATCTTCCCGAACCTGGCGATCCAGATGACGGCCATCGGCGAAGAGTCCGG
CGCGCTGGATGACATGCTCGACAAGGTGGCAAGCTTTTACGAAGCCGAAGTGGACAATCTGGTGGACAACCTCACCAGCC
TGATGGAACCCTTCATCATGGTGATCCTGGGGTTGGTCGTCGGTGGCCTGGTGGTTGCCATGTACCTGCCCATCTTTCAA
CTCGGCTCTGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D0PBV4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

73.086

100

0.731
  pilC Acinetobacter baylyi ADP1

59.296

98.272

0.583
  pilC Acinetobacter baumannii D1279779

57.353

100

0.578
  pilC Legionella pneumophila strain ERS1305867

54.545

97.778

0.533
  pilG Neisseria meningitidis 44/76-A

43.596

100

0.437
  pilG Neisseria gonorrhoeae MS11

43.672

99.506

0.435
  pilC Vibrio campbellii strain DS40M4

42.929

97.778

0.42
  pilC Vibrio cholerae strain A1552

42.677

97.778

0.417
  pilC Thermus thermophilus HB27

37.656

99.012

0.373