Detailed information NTG0934810

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: V3H56_RS23105
• Genome accession: NZ_CP144763
• Coordinates: 5242615..5243484 (+)
• Length: 289 a.a.
• NCBI ID: WP_042730992.1
• Uniprot ID: -
• Organism: Pseudomonas sp. MS646
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5237615..5248484

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V3H56_RS23080 (V3H56_23080)	-	5237875..5238171 (+)	297	WP_042730997.1	DUF2845 domain-containing protein	-
V3H56_RS23085 (V3H56_23085)	-	5238437..5238790 (-)	354	WP_042730996.1	BON domain-containing protein	-
V3H56_RS23090 (V3H56_23090)	-	5239055..5239462 (-)	408	WP_042730995.1	pilin	-
V3H56_RS23095 (V3H56_23095)	pilB	5239693..5241393 (+)	1701	WP_338473906.1	type IV-A pilus assembly ATPase PilB	Machinery gene
V3H56_RS23100 (V3H56_23100)	pilC	5241396..5242613 (+)	1218	WP_042730993.1	type II secretion system F family protein	Machinery gene
V3H56_RS23105 (V3H56_23105)	pilD	5242615..5243484 (+)	870	WP_042730992.1	A24 family peptidase	Machinery gene
V3H56_RS23110 (V3H56_23110)	coaE	5243497..5244120 (+)	624	WP_338473907.1	dephospho-CoA kinase	-
V3H56_RS23115 (V3H56_23115)	yacG	5244117..5244323 (+)	207	WP_042730990.1	DNA gyrase inhibitor YacG	-
V3H56_RS23120 (V3H56_23120)	-	5244320..5244535 (-)	216	WP_042730989.1	hypothetical protein	-
V3H56_RS23125 (V3H56_23125)	-	5244599..5245285 (-)	687	WP_042730988.1	energy-coupling factor ABC transporter permease	-
V3H56_RS23130 (V3H56_23130)	-	5245453..5246079 (+)	627	WP_003185538.1	DUF1780 domain-containing protein	-
V3H56_RS23135 (V3H56_23135)	-	5246201..5246374 (+)	174	WP_003185543.1	DUF3094 domain-containing protein	-
V3H56_RS23140 (V3H56_23140)	-	5246477..5247778 (+)	1302	WP_123579600.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31787.93 Da
• Isoelectric Point: 8.3445

>NTDB_id=934810 V3H56_RS23105 WP_042730992.1 5242615..5243484(+) (pilD) [Pseudomonas sp. MS646]
MPLSEFFVLYPLAFVLTALLLGLIVGSFLNVLVWRLPKMLSREWRVQAHDLLGLPAEAPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLMLRGRCSSCSAPIGRRYPLTELACGVLSAFVAWHLGFGWQAAGVMVLTWGLLAMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFASLNQAMWGAVAGYLALWSVYWVFKLLTGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGVIVLRLRNAPGSTQIPFGPFLAIAGWIALLWGGQITDFYWQAVGF

Nucleotide

• Length: 870 bp

>NTDB_id=934810 V3H56_RS23105 WP_042730992.1 5242615..5243484(+) (pilD) [Pseudomonas sp. MS646]
ATGCCCCTGAGCGAATTCTTCGTGCTTTATCCCCTGGCCTTCGTGCTCACTGCGTTGCTGCTCGGGCTGATCGTCGGCAG
CTTCCTCAACGTACTGGTGTGGCGTCTGCCGAAGATGCTCAGCCGCGAATGGCGCGTGCAGGCCCACGACCTGCTGGGCC
TGCCGGCCGAAGCCCCCGGCCCGGTCTACAACCTGATGCTGCCCCACTCTCAGTGCCCCCACTGTGGCCATCGCATCCGG
GCCTGGGAAAACATCCCGCTGCTCAGCTACCTGATGCTGCGCGGCCGCTGTTCGAGTTGCTCCGCTCCCATTGGCCGGCG
TTACCCGTTGACGGAACTGGCCTGCGGTGTGCTGTCAGCGTTCGTCGCCTGGCATTTGGGCTTCGGCTGGCAAGCCGCAG
GGGTGATGGTGTTGACCTGGGGTCTCCTGGCCATGAGCCTGATCGACGCCGAACACCAACTGCTCCCCGATACCCTGGTC
CTGCCGCTGTTATGGCTGGGCCTGATCGTCAACAGCTTCGGCCTGTTCGCCTCTTTGAACCAGGCCATGTGGGGAGCGGT
GGCGGGCTATCTGGCCTTGTGGTCGGTGTATTGGGTGTTCAAGTTGCTCACGGGCAAGGAAGGCATGGGCTACGGTGACT
TCAAGCTGTTGGCGATGCTAGGCGCCTGGGGTGGCTGGCAGATCCTGCCACTGACCTTGTTGCTGTCGTCGCTGGTGGGG
GCTGTGATCGGGGTCATCGTGCTGCGCCTGCGCAACGCCCCGGGGTCGACGCAGATCCCCTTTGGCCCTTTTCTGGCCAT
TGCCGGCTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGGCTGTCGGTTTCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.817	98.27	0.519
pilD	Vibrio campbellii strain DS40M4	50.877	98.616	0.502
pilD	Neisseria gonorrhoeae MS11	48.78	99.308	0.484
pilD	Acinetobacter baumannii D1279779	47.687	97.232	0.464
pilD	Acinetobacter nosocomialis M2	47.687	97.232	0.464