Detailed information NTG0934114

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: V4S29_RS07230
• Genome accession: NZ_CP144498
• Coordinates: 1416912..1417340 (-)
• Length: 142 a.a.
• NCBI ID: WP_047338779.1
• Uniprot ID: A0A1Y4QXL8
• Organism: Enterococcus cecorum strain 66
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1411912..1422340

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V4S29_RS07165 (V4S29_07170)	-	1412369..1412587 (-)	219	WP_087215151.1	hypothetical protein	-
V4S29_RS07170 (V4S29_07175)	-	1412574..1413053 (-)	480	WP_347904931.1	hypothetical protein	-
V4S29_RS07175 (V4S29_07180)	-	1413173..1413484 (-)	312	WP_347904933.1	hypothetical protein	-
V4S29_RS07180 (V4S29_07185)	-	1413471..1413869 (-)	399	WP_281957195.1	hypothetical protein	-
V4S29_RS07185 (V4S29_07190)	-	1413888..1414106 (-)	219	WP_281957196.1	hypothetical protein	-
V4S29_RS07190 (V4S29_07195)	-	1414125..1414613 (-)	489	WP_281957198.1	hypothetical protein	-
V4S29_RS07195 (V4S29_07200)	-	1414606..1414773 (-)	168	WP_162607288.1	hypothetical protein	-
V4S29_RS07200 (V4S29_07205)	-	1414835..1414972 (-)	138	WP_161794353.1	hypothetical protein	-
V4S29_RS07205 (V4S29_07210)	-	1414994..1415356 (-)	363	WP_087215119.1	hypothetical protein	-
V4S29_RS07210 (V4S29_07215)	-	1415373..1415831 (-)	459	WP_087215116.1	hypothetical protein	-
V4S29_RS07215 (V4S29_07220)	-	1415842..1416354 (-)	513	WP_143349855.1	thioredoxin	-
V4S29_RS07220 (V4S29_07225)	-	1416351..1416713 (-)	363	WP_047338778.1	hypothetical protein	-
V4S29_RS07225 (V4S29_07230)	-	1416742..1416897 (-)	156	WP_162607287.1	hypothetical protein	-
V4S29_RS07230 (V4S29_07235)	ssbA	1416912..1417340 (-)	429	WP_047338779.1	single-stranded DNA-binding protein	Machinery gene
V4S29_RS07235 (V4S29_07240)	-	1417395..1419041 (-)	1647	WP_347904939.1	hypothetical protein	-
V4S29_RS07240 (V4S29_07245)	-	1419320..1422238 (-)	2919	WP_001240982.1	Tn3 family transposase	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15949.81 Da
• Isoelectric Point: 4.5692

>NTDB_id=934114 V4S29_RS07230 WP_047338779.1 1416912..1417340(-) (ssbA) [Enterococcus cecorum strain 66]
MINSVSLTGRLIREVDLRYSKTGKPVAQFTLAVNRKYPDQNGERQADFIRCIIWGKSAEALEKYTQKGSLIGVEGRIQTR
NYTNSQGKRVYLTEVVAQDFVFLESKGTAESRNGAGIATDYEDDLPDLDMGVEEFSDDDLPF

Nucleotide

• Length: 429 bp

>NTDB_id=934114 V4S29_RS07230 WP_047338779.1 1416912..1417340(-) (ssbA) [Enterococcus cecorum strain 66]
ATGATCAATTCAGTCAGTTTAACAGGAAGACTAATTAGGGAGGTGGATTTGAGATATTCCAAAACGGGAAAGCCAGTTGC
TCAATTTACATTAGCAGTCAATCGTAAGTACCCAGATCAAAATGGCGAACGACAAGCAGATTTTATTCGTTGTATTATCT
GGGGCAAGAGTGCTGAAGCTTTAGAAAAGTATACACAAAAAGGTTCATTGATTGGTGTAGAAGGACGTATTCAGACACGT
AATTATACGAACAGTCAAGGAAAGAGAGTGTATTTAACAGAAGTTGTTGCTCAAGATTTTGTGTTTTTAGAATCAAAAGG
AACTGCTGAAAGTCGAAATGGTGCAGGAATCGCAACGGATTACGAGGACGATTTACCAGACTTAGATATGGGTGTAGAAG
AGTTTTCAGATGATGATTTACCGTTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

3D structure

• AlphaFold DB: A0A1Y4QXL8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	40.116	100	0.486
ssb	Latilactobacillus sakei subsp. sakei 23K	54.839	87.324	0.479
ssbB/cilA	Streptococcus pneumoniae TIGR4	44.056	100	0.444
ssbB/cilA	Streptococcus mitis NCTC 12261	44.056	100	0.444
ssbB/cilA	Streptococcus pneumoniae D39	43.357	100	0.437
ssbB/cilA	Streptococcus pneumoniae R6	43.357	100	0.437
ssbB/cilA	Streptococcus pneumoniae Rx1	43.357	100	0.437
ssbB/cilA	Streptococcus mitis SK321	41.958	100	0.423
ssbB	Streptococcus sobrinus strain NIDR 6715-7	44.275	92.254	0.408
ssbB	Bacillus subtilis subsp. subtilis str. 168	50.943	74.648	0.38
ssbA	Streptococcus mutans UA159	37.324	100	0.373