Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | V4S36_RS04425 | Genome accession | NZ_CP144490 |
| Coordinates | 842798..843226 (+) | Length | 142 a.a. |
| NCBI ID | WP_347943945.1 | Uniprot ID | - |
| Organism | Enterococcus cecorum strain 127 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 837798..848226
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V4S36_RS04400 (V4S36_04400) | ilvN | 838107..838583 (+) | 477 | WP_347906750.1 | acetolactate synthase small subunit | - |
| V4S36_RS04405 (V4S36_04405) | ilvC | 838641..839639 (+) | 999 | WP_047339155.1 | ketol-acid reductoisomerase | - |
| V4S36_RS04410 (V4S36_04410) | ilvA | 839660..840916 (+) | 1257 | WP_347906752.1 | threonine ammonia-lyase IlvA | - |
| V4S36_RS04415 (V4S36_04415) | - | 841126..842424 (+) | 1299 | WP_347943942.1 | hypothetical protein | - |
| V4S36_RS04420 (V4S36_04420) | - | 842372..842743 (+) | 372 | WP_347943943.1 | hypothetical protein | - |
| V4S36_RS04425 (V4S36_04425) | ssbA | 842798..843226 (+) | 429 | WP_347943945.1 | single-stranded DNA-binding protein | Machinery gene |
| V4S36_RS04430 (V4S36_04430) | - | 843241..843396 (+) | 156 | WP_162607287.1 | hypothetical protein | - |
| V4S36_RS04435 (V4S36_04435) | - | 843425..843787 (+) | 363 | WP_047338778.1 | hypothetical protein | - |
| V4S36_RS04440 (V4S36_04440) | - | 843784..844296 (+) | 513 | WP_347943946.1 | thioredoxin | - |
| V4S36_RS04445 (V4S36_04445) | - | 844307..844765 (+) | 459 | WP_087215116.1 | hypothetical protein | - |
| V4S36_RS04450 (V4S36_04450) | - | 844782..845144 (+) | 363 | WP_087215119.1 | hypothetical protein | - |
| V4S36_RS04455 (V4S36_04455) | - | 845166..845303 (+) | 138 | WP_161794353.1 | hypothetical protein | - |
| V4S36_RS04460 (V4S36_04460) | - | 845365..845532 (+) | 168 | WP_162607288.1 | hypothetical protein | - |
| V4S36_RS04465 (V4S36_04465) | - | 845525..846013 (+) | 489 | WP_347943948.1 | hypothetical protein | - |
| V4S36_RS04470 (V4S36_04470) | - | 846032..846250 (+) | 219 | WP_347943949.1 | hypothetical protein | - |
| V4S36_RS04475 (V4S36_04475) | - | 846269..846667 (+) | 399 | WP_347943950.1 | hypothetical protein | - |
| V4S36_RS04480 (V4S36_04480) | - | 846654..847058 (+) | 405 | WP_347943951.1 | hypothetical protein | - |
| V4S36_RS04485 (V4S36_04485) | - | 847045..847395 (+) | 351 | WP_171300062.1 | hypothetical protein | - |
| V4S36_RS04490 (V4S36_04490) | - | 847395..847817 (+) | 423 | WP_171300063.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 15905.80 Da Isoelectric Point: 4.6708
>NTDB_id=934025 V4S36_RS04425 WP_347943945.1 842798..843226(+) (ssbA) [Enterococcus cecorum strain 127]
MINSVSLTGRLIREVDLRYSKTGKPVAQFTLAVNRKYPAQNGERQADFIRCIIWGKSAEALEKYTQKGSLIGVEGRIQTR
NYTNSQGKRVYLTEVVAQDFVFLESKGTAESRNGAGIATDYEDDLPDLDMGVEEFSDDDLPF
MINSVSLTGRLIREVDLRYSKTGKPVAQFTLAVNRKYPAQNGERQADFIRCIIWGKSAEALEKYTQKGSLIGVEGRIQTR
NYTNSQGKRVYLTEVVAQDFVFLESKGTAESRNGAGIATDYEDDLPDLDMGVEEFSDDDLPF
Nucleotide
Download Length: 429 bp
>NTDB_id=934025 V4S36_RS04425 WP_347943945.1 842798..843226(+) (ssbA) [Enterococcus cecorum strain 127]
ATGATCAATTCAGTCAGTTTAACAGGAAGACTAATTAGGGAGGTGGATTTGAGATATTCCAAAACAGGAAAGCCAGTTGC
TCAATTTACATTAGCAGTCAATCGTAAGTACCCAGCTCAAAATGGCGAACGACAAGCAGATTTTATTCGTTGTATTATCT
GGGGCAAGAGTGCTGAAGCTTTAGAAAAGTATACACAAAAAGGTTCATTGATTGGTGTAGAAGGACGTATTCAGACACGT
AATTATACGAACAGTCAAGGAAAGAGAGTGTATTTAACAGAAGTTGTTGCTCAAGATTTTGTGTTTTTAGAATCAAAAGG
AACTGCTGAAAGTCGAAATGGTGCAGGAATCGCAACGGATTACGAGGACGATTTACCAGACTTAGATATGGGTGTAGAAG
AGTTTTCAGATGATGATTTACCGTTTTAA
ATGATCAATTCAGTCAGTTTAACAGGAAGACTAATTAGGGAGGTGGATTTGAGATATTCCAAAACAGGAAAGCCAGTTGC
TCAATTTACATTAGCAGTCAATCGTAAGTACCCAGCTCAAAATGGCGAACGACAAGCAGATTTTATTCGTTGTATTATCT
GGGGCAAGAGTGCTGAAGCTTTAGAAAAGTATACACAAAAAGGTTCATTGATTGGTGTAGAAGGACGTATTCAGACACGT
AATTATACGAACAGTCAAGGAAAGAGAGTGTATTTAACAGAAGTTGTTGCTCAAGATTTTGTGTTTTTAGAATCAAAAGG
AACTGCTGAAAGTCGAAATGGTGCAGGAATCGCAACGGATTACGAGGACGATTTACCAGACTTAGATATGGGTGTAGAAG
AGTTTTCAGATGATGATTTACCGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
40.116 |
100 |
0.486 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.839 |
87.324 |
0.479 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
43.357 |
100 |
0.437 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
43.357 |
100 |
0.437 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
42.657 |
100 |
0.43 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
42.657 |
100 |
0.43 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
42.657 |
100 |
0.43 |
| ssbB/cilA | Streptococcus mitis SK321 |
42.657 |
100 |
0.43 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
44.275 |
92.254 |
0.408 |
| ssbA | Streptococcus mutans UA159 |
38.732 |
100 |
0.387 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
50.943 |
74.648 |
0.38 |