Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   V2I71_RS25900 Genome accession   NZ_CP143575
Coordinates   5412990..5413352 (-) Length   120 a.a.
NCBI ID   WP_053536875.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain GR2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5407990..5418352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2I71_RS25885 (V2I71_25885) - 5408935..5410551 (-) 1617 WP_057278170.1 ABC transporter substrate-binding protein -
  V2I71_RS25890 (V2I71_25890) - 5410594..5411562 (-) 969 WP_057278171.1 ABC transporter ATP-binding protein -
  V2I71_RS25895 (V2I71_25895) - 5411543..5412547 (-) 1005 WP_170956572.1 ABC transporter ATP-binding protein -
  V2I71_RS25900 (V2I71_25900) ssbB 5412990..5413352 (-) 363 WP_053536875.1 single-stranded DNA-binding protein Machinery gene
  V2I71_RS25905 (V2I71_25905) - 5413711..5414145 (+) 435 WP_034315749.1 YwpF family protein -
  V2I71_RS25910 (V2I71_25910) - 5414258..5414572 (-) 315 WP_264639888.1 hypothetical protein -
  V2I71_RS25915 (V2I71_25915) fabZ 5414850..5415278 (-) 429 WP_034315755.1 3-hydroxyacyl-ACP dehydratase FabZ -
  V2I71_RS25920 (V2I71_25920) - 5415407..5415661 (-) 255 WP_053087418.1 DNA-directed RNA polymerase subunit beta -
  V2I71_RS25925 (V2I71_25925) - 5415830..5416672 (-) 843 WP_330501877.1 flagellar hook-basal body protein -
  V2I71_RS25930 (V2I71_25930) - 5416721..5417560 (-) 840 WP_330501878.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13658.54 Da        Isoelectric Point: 9.6262

>NTDB_id=929773 V2I71_RS25900 WP_053536875.1 5412990..5413352(-) (ssbB) [Peribacillus frigoritolerans strain GR2]
MINQVTLVGRLTKDPELRYTPDGKAVSNITLAVNRNFRNTVGNYEADFVQCIIWKKSAENTAQYCKKGAIIGITGRIQTR
RYENQEGKYVYVTEVVSERVQFIGTKQNDGKPKDFEHIGL

Nucleotide


Download         Length: 363 bp        

>NTDB_id=929773 V2I71_RS25900 WP_053536875.1 5412990..5413352(-) (ssbB) [Peribacillus frigoritolerans strain GR2]
ATGATTAACCAAGTTACCCTCGTCGGCAGGCTTACGAAGGATCCAGAATTAAGATACACACCTGATGGCAAGGCTGTTTC
CAATATCACATTAGCAGTCAACCGGAACTTCCGTAATACTGTCGGTAACTATGAGGCAGACTTTGTACAGTGTATCATAT
GGAAAAAGTCGGCTGAAAATACTGCTCAATATTGTAAAAAAGGAGCCATAATCGGCATCACTGGCAGAATACAAACAAGG
AGATACGAAAATCAGGAGGGTAAATATGTATATGTAACTGAAGTGGTCTCCGAGAGGGTTCAATTCATCGGAACTAAACA
AAATGATGGAAAGCCCAAGGATTTTGAACATATTGGTTTATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.649

95

0.567
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.377

88.333

0.533
  ssb Latilactobacillus sakei subsp. sakei 23K

52.066

100

0.525
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.396

88.333

0.383
  ssbB/cilA Streptococcus mitis NCTC 12261

42.453

88.333

0.375
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.453

88.333

0.375
  ssbB/cilA Streptococcus mitis SK321

41.509

88.333

0.367
  ssbB/cilA Streptococcus pneumoniae Rx1

41.509

88.333

0.367
  ssbB/cilA Streptococcus pneumoniae D39

41.509

88.333

0.367
  ssbB/cilA Streptococcus pneumoniae R6

41.509

88.333

0.367
  ssbA Streptococcus mutans UA159

41.509

88.333

0.367