Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   V1500_RS23610 Genome accession   NZ_CP143547
Coordinates   4841119..4841481 (-) Length   120 a.a.
NCBI ID   WP_409303160.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-155     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4836119..4846481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1500_RS23590 (V1500_23590) - 4836743..4838353 (-) 1611 WP_409303154.1 ABC transporter substrate-binding protein -
  V1500_RS23595 (V1500_23595) - 4838406..4839374 (-) 969 WP_409303155.1 ABC transporter ATP-binding protein -
  V1500_RS23600 (V1500_23600) - 4839349..4840359 (-) 1011 WP_409303157.1 ABC transporter ATP-binding protein -
  V1500_RS23605 (V1500_23605) - 4840733..4841098 (-) 366 WP_409303159.1 hypothetical protein -
  V1500_RS23610 (V1500_23610) ssbB 4841119..4841481 (-) 363 WP_409303160.1 single-stranded DNA-binding protein Machinery gene
  V1500_RS23615 (V1500_23615) - 4841839..4842270 (+) 432 WP_409303161.1 YwpF family protein -
  V1500_RS23620 (V1500_23620) - 4842323..4842673 (-) 351 WP_409303163.1 hypothetical protein -
  V1500_RS23625 (V1500_23625) fabZ 4843073..4843504 (-) 432 WP_409303165.1 3-hydroxyacyl-ACP dehydratase FabZ -
  V1500_RS23630 (V1500_23630) - 4843622..4843882 (-) 261 WP_409303167.1 DNA-directed RNA polymerase subunit beta -
  V1500_RS23635 (V1500_23635) - 4843956..4844786 (-) 831 WP_409303169.1 flagellar hook-basal body protein -
  V1500_RS23640 (V1500_23640) - 4844837..4845670 (-) 834 WP_409303170.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13653.41 Da        Isoelectric Point: 8.4685

>NTDB_id=929630 V1500_RS23610 WP_409303160.1 4841119..4841481(-) (ssbB) [Peribacillus sp. SCS-155]
MINQVTLVGRLTRDPELRYTPEGKAVVNVTLAVNRNFRNASGEYDADFVQCTIWQRTAENTAQYCRKGSIIGITGRIQTR
SYDNQEGRKVYVTDVVAESVRFVGQRPQEQKMEVPQALEI

Nucleotide


Download         Length: 363 bp        

>NTDB_id=929630 V1500_RS23610 WP_409303160.1 4841119..4841481(-) (ssbB) [Peribacillus sp. SCS-155]
GTGATCAATCAAGTAACCTTAGTAGGAAGGTTGACTCGGGACCCAGAGCTGCGGTATACGCCGGAAGGAAAAGCTGTTGT
AAATGTTACATTGGCTGTAAACCGTAATTTTCGGAATGCCAGCGGAGAATATGATGCAGATTTCGTCCAATGTACCATCT
GGCAGAGAACGGCCGAAAATACAGCGCAATATTGCAGGAAAGGCTCAATCATCGGGATAACCGGGAGAATACAAACCAGG
AGCTATGATAATCAAGAAGGCAGAAAAGTATATGTTACGGATGTAGTTGCAGAATCTGTCCGATTTGTTGGACAACGGCC
CCAAGAGCAGAAAATGGAAGTACCACAGGCATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.717

94.167

0.6
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.165

85.833

0.525
  ssb Latilactobacillus sakei subsp. sakei 23K

53.774

88.333

0.475
  ssbA Streptococcus mutans UA159

44.444

90

0.4
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.519

90

0.392
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.667

90

0.375
  ssbB/cilA Streptococcus pneumoniae Rx1

40.741

90

0.367
  ssbB/cilA Streptococcus pneumoniae D39

40.741

90

0.367
  ssbB/cilA Streptococcus pneumoniae R6

40.741

90

0.367
  ssbB/cilA Streptococcus mitis SK321

40.741

90

0.367
  ssb Vibrio cholerae strain A1552

37.288

98.333

0.367