Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   V0242_RS02405 Genome accession   NZ_CP143514
Coordinates   504991..506232 (-) Length   413 a.a.
NCBI ID   WP_330543160.1    Uniprot ID   -
Organism   Aeromonas hydrophila strain MAH-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 499991..511232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V0242_RS02375 (V0242_02375) - 500791..501975 (+) 1185 WP_330543152.1 tetratricopeptide repeat protein -
  V0242_RS02380 (V0242_02380) mutT 501984..502397 (+) 414 WP_330543153.1 8-oxo-dGTP diphosphatase MutT -
  V0242_RS02385 (V0242_02385) yacG 502458..502652 (-) 195 WP_005305661.1 DNA gyrase inhibitor YacG -
  V0242_RS02390 (V0242_02390) zapD 502662..503384 (-) 723 WP_330543154.1 cell division protein ZapD -
  V0242_RS02395 (V0242_02395) coaE 503422..504036 (-) 615 WP_330543156.1 dephospho-CoA kinase -
  V0242_RS02400 (V0242_02400) pilD 504056..504928 (-) 873 WP_330543157.1 A24 family peptidase Machinery gene
  V0242_RS02405 (V0242_02405) pilC 504991..506232 (-) 1242 WP_330543160.1 type II secretion system F family protein Machinery gene
  V0242_RS02410 (V0242_02410) pilB 506348..508054 (-) 1707 WP_029302067.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  V0242_RS02415 (V0242_02415) - 508058..508495 (-) 438 WP_254201361.1 pilin -
  V0242_RS02420 (V0242_02420) nadC 508818..509675 (-) 858 WP_330543164.1 carboxylating nicotinate-nucleotide diphosphorylase -
  V0242_RS02425 (V0242_02425) - 509681..510151 (-) 471 WP_024944772.1 TIGR02281 family clan AA aspartic protease -
  V0242_RS02430 (V0242_02430) ampD 510298..510870 (+) 573 WP_330543168.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45452.65 Da        Isoelectric Point: 9.8635

>NTDB_id=929259 V0242_RS02405 WP_330543160.1 504991..506232(-) (pilC) [Aeromonas hydrophila strain MAH-4]
MATLTQKQNPPKKVFVFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTRFVIGISRFMQNWWYVIFGGIA
LAIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=929259 V0242_RS02405 WP_330543160.1 504991..506232(-) (pilC) [Aeromonas hydrophila strain MAH-4]
ATGGCAACGCTAACCCAGAAACAGAATCCCCCCAAAAAAGTCTTCGTCTTTCGCTGGAGCGGGGTAAATCGCAAGGGCCA
GAAGGTTTCCGGCGAATTGCAGGCCGACAGCATCAACACGGTCAAGGCAGAGCTGCGCAAACAGGGTGTCAACGTCACCA
AGGTGAGCAAGAAGAGCCAGGGGCTCTTCTCCAAGGGCGGTGCCAAGATCAAGCCGATGGACATTGCCATCGTTTCCCGC
CAGATCACCACCATGCTGTCAGCCGGCGTACCTCTGGTCCAGAGCCTGCAGATCATCGCTCGCAGCCACGAGAAAGCGGC
CATGCGCGAGCTCATGGGCCAAATTGCCGCCGATGTGGAGACCGGCACCCCCATGTCCGAGGCGCTGCGCCGTCATCCCC
GTCACTTTGACGATCTCTACTGCGATCTGGTGGAGGCTGGCGAGCAATCCGGCGCTCTCGAGACCATCTACGATCGCATC
GCCACCTATCGCGAGAAATCGGAAGCCCTCAAGTCCAAGATCAAGAAAGCCATGTTCTACCCCACCATGGTCATCCTGGT
GGCCATTGTCGTTACCTCCATCCTGCTGCTGTTCGTCATCCCTCAGTTCGAGGACATCTTCAAGAGCTTCGGCGCCGAGC
TACCTATCTTTACCCGATTTGTCATCGGCATCTCCCGTTTCATGCAGAACTGGTGGTACGTGATCTTTGGCGGCATAGCG
CTCGCCATCTTTCTCTATGTGCGTGCCTGGCGCGCCTCCCAGAAGGTCAAGGACAATACCGACAAGTTCGTACTGACCAT
CCCCGTGGTCGGCATGATACTGCACAAGGCGGCCATGGCCCGCTTCGCTCGCACCCTCTCCACCACCTTCTCCGCCGGTA
TCCCGCTGGTGGATGCCTTGATCTCTGCGGCAGGCGCCTCCGGCAACTATGTCTACCGCACAGCCGTCATGGCCATTCGC
AACGAGGTGGTAGCCGGCATGCAGATCAACGTAGCCATGCGCACCGTGGATCTCTTCCCTGACATGGTGATCCAGATGGT
AATGATTGGCGAGGAGTCCGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAGCAGGAGGTGGACGATC
TGGTCGACGGCCTCACCAGCCTGCTGGAGCCTCTCATCATGGTGGTGCTGGGGGTGCTGGTTGGTGGTATGGTGGTCGCC
ATGTATTTGCCCATCTTCAAGCTAGGCGATGTAGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.431

96.126

0.552
  pilC Acinetobacter baumannii D1279779

54

96.852

0.523
  pilC Acinetobacter baylyi ADP1

52.513

96.368

0.506
  pilC Legionella pneumophila strain ERS1305867

51.478

98.305

0.506
  pilC Vibrio cholerae strain A1552

47.619

96.61

0.46
  pilC Vibrio campbellii strain DS40M4

46.231

96.368

0.446
  pilG Neisseria gonorrhoeae MS11

40

98.063

0.392
  pilG Neisseria meningitidis 44/76-A

39.753

98.063

0.39
  pilC Thermus thermophilus HB27

38.404

97.094

0.373