NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	V0242_RS02400	Genome accession	NZ_CP143514
Coordinates	504056..504928 (-)	Length	290 a.a.
NCBI ID	WP_330543157.1	Uniprot ID	-
Organism	Aeromonas hydrophila strain MAH-4
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 499056..509928

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V0242_RS02375 (V0242_02375)	-	500791..501975 (+)	1185	WP_330543152.1	tetratricopeptide repeat protein	-
V0242_RS02380 (V0242_02380)	mutT	501984..502397 (+)	414	WP_330543153.1	8-oxo-dGTP diphosphatase MutT	-
V0242_RS02385 (V0242_02385)	yacG	502458..502652 (-)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
V0242_RS02390 (V0242_02390)	zapD	502662..503384 (-)	723	WP_330543154.1	cell division protein ZapD	-
V0242_RS02395 (V0242_02395)	coaE	503422..504036 (-)	615	WP_330543156.1	dephospho-CoA kinase	-
V0242_RS02400 (V0242_02400)	pilD	504056..504928 (-)	873	WP_330543157.1	A24 family peptidase	Machinery gene
V0242_RS02405 (V0242_02405)	pilC	504991..506232 (-)	1242	WP_330543160.1	type II secretion system F family protein	Machinery gene
V0242_RS02410 (V0242_02410)	pilB	506348..508054 (-)	1707	WP_029302067.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
V0242_RS02415 (V0242_02415)	-	508058..508495 (-)	438	WP_254201361.1	pilin	-
V0242_RS02420 (V0242_02420)	nadC	508818..509675 (-)	858	WP_330543164.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

Download Length: 290 a.a. Molecular weight: 32442.76 Da Isoelectric Point: 6.7413

                                >NTDB_id=929258 V0242_RS02400 WP_330543157.1 504056..504928(-) (pilD) [Aeromonas hydrophila strain MAH-4]

MTLLLELAHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQPQQEERYNLMVPRSACPHCGHA

ITAIENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAVTFPPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ

LTLPLLWGGLLFNLAGGFAPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL

VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

Download Length: 873 bp

                                >NTDB_id=929258 V0242_RS02400 WP_330543157.1 504056..504928(-) (pilD) [Aeromonas hydrophila strain MAH-4]

ATGACACTTCTCCTCGAGCTGGCTCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCTCTGATGATCGG

CAGTTTTCTCAACGTGGTCATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAAGCCGAATATCTCGGCTATTTCA

ATCCAGAGACACAGCCGCAGCAGGAAGAACGCTACAACCTGATGGTGCCGCGTTCTGCCTGCCCTCATTGCGGCCACGCC

ATCACGGCCATAGAGAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCCATCTC

GGCCCGTTATCCTCTGGTGGAGCTGCTGACGGCCCTGCTCTCGCTGGTCGTCGCAGTAACATTCCCACCGGGCTGGGGTT

TGCTGGCCGCCCTGCTGCTCACCTGGGTACTGGTGGCACTCACTTTCATCGATCTGGACAAGATGTTGCTGCCGGACCAG

CTGACCCTGCCACTGCTGTGGGGCGGCCTGCTGTTCAACCTGGCAGGGGGATTTGCACCGCTGGCAGATGCGGTGATCGG

CGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGGTATG

GCGACTTCAAACTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTACTGCTGCTCTCGTCGCTG

GTTGGCGCTTTCATCGGGATTGGTCTCATTCTGCTGCGCAACCATCATCAGAACAAACCCATCCCCTTCGGCCCCTATCT

GGCTATCGCCGGCTGGATCGCACTGTTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	62.153	99.31	0.617
pilD	Vibrio campbellii strain DS40M4	55.401	98.966	0.548
pilD	Acinetobacter baumannii D1279779	55.036	95.862	0.528
pilD	Acinetobacter nosocomialis M2	55.036	95.862	0.528
pilD	Neisseria gonorrhoeae MS11	48.718	94.138	0.459

Detailed information NTG0929258