Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KAN5_RS11335 Genome accession   NZ_AP025589
Coordinates   2542537..2543766 (+) Length   409 a.a.
NCBI ID   WP_244389727.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. KAN5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2537537..2548766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAN5_RS11315 (KAN5_22110) ampD 2538130..2538696 (-) 567 WP_138553799.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  KAN5_RS11320 (KAN5_22120) nadC 2539390..2540235 (+) 846 WP_244389725.1 carboxylating nicotinate-nucleotide diphosphorylase -
  KAN5_RS11325 (KAN5_22130) pilA/pilAI 2540783..2541214 (+) 432 WP_279612611.1 pilin Machinery gene
  KAN5_RS11330 - 2541252..2542523 (+) 1272 WP_244389726.1 O-antigen ligase family protein -
  KAN5_RS11335 (KAN5_22160) pilC 2542537..2543766 (+) 1230 WP_244389727.1 type II secretion system F family protein Machinery gene
  KAN5_RS11340 (KAN5_22170) pilD 2544268..2545167 (+) 900 WP_279612612.1 A24 family peptidase Machinery gene
  KAN5_RS11345 (KAN5_22180) coaE 2545169..2545798 (+) 630 WP_244389728.1 dephospho-CoA kinase -
  KAN5_RS11350 (KAN5_22190) pilB 2545990..2547669 (+) 1680 WP_244389729.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KAN5_RS11355 (KAN5_22200) yacG 2547730..2547960 (+) 231 WP_016708280.1 DNA gyrase inhibitor YacG -
  KAN5_RS11360 (KAN5_22210) - 2548287..2548475 (-) 189 WP_138553807.1 hypothetical protein -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44501.54 Da        Isoelectric Point: 9.5508

>NTDB_id=92881 KAN5_RS11335 WP_244389727.1 2542537..2543766(+) (pilC) [Pseudoalteromonas sp. KAN5]
MNKNSDQMNKDTFLWVGVSARGKRLEGEMSGASIALVKAQLRKQGITPSKVKRKAKPLFGIQNMQKITPKDIALVTRQIA
TMLMAGVPLIQSIEMIGTGATNKSVGKLMETIGDEVKAGGTLSEALRKHPRYFDDLYCDLVASGEQSGALDKIFDRVALY
KEKSEALKSKIKKAMFYPIAVLVVALIVTSILLIFVVPQFQDIFNGFGAELPAFTLMVIGISEFMQEYWWMMLIALVGFG
WAYKEALLKSKKLRDANDRAILKLPVIGMILNKAAVARYARTLSTTFAAGVPLVDALDSAAGASGNAVYRYAILDIKAEV
SSGNQMNWAMRNSKIFPDMVIQMVAIGEESGSLDGMLAKVANIYEQEVDDAVDGLSSLLEPLIMAVLGVLVGGLIIAMYL
PIFQLGSVI

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=92881 KAN5_RS11335 WP_244389727.1 2542537..2543766(+) (pilC) [Pseudoalteromonas sp. KAN5]
ATGAATAAAAACTCGGACCAAATGAATAAGGATACTTTTTTATGGGTCGGTGTCAGCGCTCGTGGTAAACGTTTAGAAGG
TGAGATGTCTGGTGCCAGTATAGCGCTAGTAAAAGCCCAGCTTCGCAAACAAGGTATCACGCCGTCTAAAGTAAAGCGCA
AAGCCAAACCGCTGTTTGGTATTCAAAACATGCAAAAAATTACGCCAAAAGATATTGCGCTCGTTACCCGGCAAATCGCC
ACTATGTTGATGGCGGGCGTGCCGCTGATTCAATCAATCGAAATGATTGGCACGGGAGCTACCAATAAAAGCGTTGGAAA
GCTAATGGAGACCATTGGCGATGAAGTAAAAGCCGGTGGTACATTGTCAGAAGCATTACGAAAACACCCTCGCTATTTTG
ATGACTTATATTGTGACTTAGTCGCCTCTGGTGAGCAATCTGGTGCACTGGATAAAATATTTGACCGCGTTGCTCTTTAT
AAAGAAAAGTCTGAAGCGCTAAAGTCAAAAATTAAAAAAGCCATGTTCTACCCTATTGCGGTGTTAGTTGTGGCGTTAAT
TGTTACCTCCATCCTACTTATATTTGTGGTGCCGCAATTCCAAGATATTTTTAATGGTTTTGGTGCTGAACTCCCTGCTT
TTACCTTAATGGTGATTGGTATTTCTGAGTTTATGCAGGAATATTGGTGGATGATGTTAATTGCCCTTGTTGGTTTTGGC
TGGGCTTACAAAGAAGCATTGCTAAAAAGCAAGAAGCTGCGTGATGCTAACGACCGTGCTATTTTAAAGCTGCCTGTTAT
AGGTATGATTTTAAACAAAGCCGCAGTGGCGCGTTATGCGCGTACCCTTTCGACCACCTTTGCGGCCGGTGTACCCTTGG
TTGATGCGCTGGACTCTGCAGCCGGTGCTTCTGGTAACGCGGTTTATCGCTATGCTATTTTAGATATTAAAGCTGAAGTA
AGCTCAGGTAATCAAATGAACTGGGCAATGCGTAACTCAAAAATATTCCCCGATATGGTGATTCAAATGGTGGCCATTGG
TGAAGAGTCAGGCTCTTTAGATGGCATGCTGGCCAAGGTCGCTAATATTTATGAACAAGAAGTTGATGATGCGGTAGATG
GCTTATCAAGCCTTTTAGAGCCGCTTATTATGGCGGTACTCGGCGTGTTAGTGGGTGGTTTGATCATAGCGATGTACTTA
CCAATATTCCAACTTGGGTCGGTTATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(76-198)

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

63.224

97.066

0.614
  pilC Legionella pneumophila strain ERS1305867

55.501

100

0.555
  pilC Acinetobacter baumannii D1279779

55.779

97.311

0.543
  pilC Acinetobacter baylyi ADP1

55.164

97.066

0.535
  pilC Vibrio cholerae strain A1552

43.659

100

0.438
  pilG Neisseria meningitidis 44/76-A

43.622

95.844

0.418
  pilG Neisseria gonorrhoeae MS11

43.367

95.844

0.416
  pilC Vibrio campbellii strain DS40M4

42.569

97.066

0.413

Multiple sequence alignment