Detailed information NTG0092882

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KAN5_RS11340
• Genome accession: NZ_AP025589
• Coordinates: 2544268..2545167 (+)
• Length: 299 a.a.
• NCBI ID: WP_279612612.1
• Uniprot ID: -
• Organism: Pseudoalteromonas sp. KAN5
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2539268..2550167

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KAN5_RS11320 (KAN5_22120)	nadC	2539390..2540235 (+)	846	WP_244389725.1	carboxylating nicotinate-nucleotide diphosphorylase	-
KAN5_RS11325 (KAN5_22130)	pilA/pilAI	2540783..2541214 (+)	432	WP_279612611.1	pilin	Machinery gene
KAN5_RS11330	-	2541252..2542523 (+)	1272	WP_244389726.1	O-antigen ligase family protein	-
KAN5_RS11335 (KAN5_22160)	pilC	2542537..2543766 (+)	1230	WP_244389727.1	type II secretion system F family protein	Machinery gene
KAN5_RS11340 (KAN5_22170)	pilD	2544268..2545167 (+)	900	WP_279612612.1	A24 family peptidase	Machinery gene
KAN5_RS11345 (KAN5_22180)	coaE	2545169..2545798 (+)	630	WP_244389728.1	dephospho-CoA kinase	-
KAN5_RS11350 (KAN5_22190)	pilB	2545990..2547669 (+)	1680	WP_244389729.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KAN5_RS11355 (KAN5_22200)	yacG	2547730..2547960 (+)	231	WP_016708280.1	DNA gyrase inhibitor YacG	-
KAN5_RS11360 (KAN5_22210)	-	2548287..2548475 (-)	189	WP_138553807.1	hypothetical protein	-
KAN5_RS11365 (KAN5_22220)	-	2548476..2549708 (-)	1233	WP_244389730.1	divalent metal cation transporter	-

Sequence

Protein

• Length: 299 a.a.
• Molecular weight: 33061.51 Da
• Isoelectric Point: 7.8642

>NTDB_id=92882 KAN5_RS11340 WP_279612612.1 2544268..2545167(+) (pilD) [Pseudoalteromonas sp. KAN5]
MHEFFLDIVTVMQSQLWFYLLTVGLVSLCVGSFLNVVIYRLPLMMQREWQTECRVLLADELKSNKSASTPKPFNLVTPNS
TCPKCKTAIKAWQNIPVISWLILKGRCASCSNPISVRYPIIEMLTAVLSLIVAYTFGATEQALLYILITWVLVALTFIDI
DHMLLPDQLTLPLVWVALIAAVTGITISPTDAIIGAACGYLSLWSVFWLFKLITGKEGMGYGDFKLLAVFGALLGWQSLL
TIILLSSVVGAIIGIALLSIQGKDKATPIPFGPYLAIAGWVTLLWGSQIQAFYFNWLGY

Nucleotide

• Length: 900 bp

>NTDB_id=92882 KAN5_RS11340 WP_279612612.1 2544268..2545167(+) (pilD) [Pseudoalteromonas sp. KAN5]
ATGCACGAATTTTTTCTCGATATAGTTACAGTCATGCAAAGCCAGTTATGGTTTTATTTACTCACTGTTGGCTTAGTAAG
CTTATGTGTTGGCAGTTTTTTAAACGTTGTTATTTATCGTTTGCCACTGATGATGCAACGCGAGTGGCAAACTGAGTGCC
GTGTTTTACTCGCAGACGAACTAAAAAGTAATAAATCAGCAAGTACGCCAAAGCCGTTTAATTTAGTGACACCTAACTCG
ACCTGTCCAAAATGCAAAACAGCCATTAAAGCATGGCAAAATATCCCAGTGATCAGTTGGTTAATACTAAAAGGCCGCTG
CGCCAGCTGTAGTAACCCAATATCAGTGCGCTACCCTATTATTGAAATGCTTACGGCAGTGTTAAGCCTAATAGTGGCTT
ATACCTTTGGCGCGACTGAACAAGCGCTGCTGTATATTTTGATTACTTGGGTATTAGTGGCACTGACATTTATAGATATT
GATCACATGTTGCTGCCCGATCAACTCACATTACCATTAGTTTGGGTGGCACTGATTGCCGCAGTAACGGGTATTACAAT
TTCACCTACTGATGCAATTATTGGTGCGGCATGTGGTTACCTCAGCTTATGGAGTGTTTTTTGGCTATTTAAGCTAATAA
CCGGTAAAGAAGGCATGGGTTATGGCGACTTTAAATTGCTTGCTGTTTTCGGCGCACTACTTGGCTGGCAATCACTACTC
ACCATTATTTTACTATCGAGTGTGGTGGGCGCGATTATTGGTATCGCACTATTAAGTATTCAAGGCAAAGATAAAGCCAC
GCCTATTCCGTTTGGGCCTTATTTAGCCATAGCTGGTTGGGTAACCTTGTTATGGGGCTCACAAATCCAAGCGTTTTACT
TTAATTGGTTAGGCTATTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (147-255)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (26-136)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.846	95.652	0.515
pilD	Vibrio campbellii strain DS40M4	53.472	96.321	0.515
pilD	Acinetobacter baumannii D1279779	52.249	96.656	0.505
pilD	Acinetobacter nosocomialis M2	51.903	96.656	0.502
pilD	Neisseria gonorrhoeae MS11	45.914	85.953	0.395