NTDB

Overview

Name	comGC	Type	Machinery gene
Locus tag	VXJ98_RS05390	Genome accession	NZ_CP142855
Coordinates	1101575..1101886 (-)	Length	103 a.a.
NCBI ID	WP_017176238.1	Uniprot ID	-
Organism	Staphylococcus hominis strain Sh8213
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1096575..1106886

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VXJ98_RS05365 (VXJ98_05365)	gcvPA	1097133..1098485 (-)	1353	WP_017176244.1	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	-
VXJ98_RS05370 (VXJ98_05370)	gcvT	1098502..1099593 (-)	1092	WP_017176243.1	glycine cleavage system aminomethyltransferase GcvT	-
VXJ98_RS05375 (VXJ98_05375)	-	1099788..1100297 (-)	510	WP_017176242.1	shikimate kinase	-
VXJ98_RS05380 (VXJ98_05380)	-	1100462..1100923 (-)	462	WP_232132980.1	competence type IV pilus minor pilin ComGF	-
VXJ98_RS05385 (VXJ98_05385)	comGD	1101151..1101597 (-)	447	WP_256276197.1	competence type IV pilus minor pilin ComGD	-
VXJ98_RS05390 (VXJ98_05390)	comGC	1101575..1101886 (-)	312	WP_017176238.1	competence type IV pilus major pilin ComGC	Machinery gene
VXJ98_RS05395 (VXJ98_05395)	comGB	1101906..1102964 (-)	1059	WP_048681721.1	competence type IV pilus assembly protein ComGB	-
VXJ98_RS05400 (VXJ98_05400)	comGA	1102942..1103916 (-)	975	WP_017176236.1	competence type IV pilus ATPase ComGA	Machinery gene
VXJ98_RS05405 (VXJ98_05405)	-	1103967..1104593 (-)	627	WP_017176235.1	MBL fold metallo-hydrolase	-
VXJ98_RS05410 (VXJ98_05410)	-	1104595..1104918 (-)	324	WP_017176234.1	MTH1187 family thiamine-binding protein	-
VXJ98_RS05415 (VXJ98_05415)	-	1104918..1105904 (-)	987	WP_002449785.1	ROK family glucokinase	-
VXJ98_RS05420 (VXJ98_05420)	-	1105901..1106104 (-)	204	WP_017176233.1	YqgQ family protein	-

Sequence

Protein

Download Length: 103 a.a. Molecular weight: 11400.52 Da Isoelectric Point: 9.1831

                                >NTDB_id=927413 VXJ98_RS05390 WP_017176238.1 1101575..1101886(-) (comGC) [Staphylococcus hominis strain Sh8213]

MKKFKNKLKAFTLIEMLLVLLIISVLLILIIPNIAKQMSHIQSTGCEAQVKMVNSQIEAYTLKHNRVPNSIEDLVTEGFI

KQGQSSCKSGETISIKNGEAVAE

Nucleotide

Download Length: 312 bp

                                >NTDB_id=927413 VXJ98_RS05390 WP_017176238.1 1101575..1101886(-) (comGC) [Staphylococcus hominis strain Sh8213]

ATGAAAAAATTCAAAAATAAATTAAAAGCTTTTACTTTAATTGAGATGTTACTTGTACTATTAATAATTAGTGTTTTACT

CATTCTTATTATTCCGAATATAGCTAAACAAATGTCACATATTCAATCAACAGGATGTGAAGCACAAGTGAAAATGGTCA

ATAGTCAAATTGAAGCTTATACTTTAAAACATAATAGAGTTCCTAATTCTATTGAGGACTTAGTAACTGAAGGGTTTATA

AAACAAGGGCAATCATCTTGTAAGTCTGGAGAAACTATCAGTATTAAAAATGGAGAAGCAGTTGCAGAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-30)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comGC	Staphylococcus aureus N315	79.412	99.029	0.786
comGC	Staphylococcus aureus MW2	79.412	99.029	0.786
comGC/cglC	Streptococcus mitis SK321	46.875	93.204	0.437
comGC/cglC	Streptococcus pneumoniae D39	45.833	93.204	0.427
comGC/cglC	Streptococcus pneumoniae R6	45.833	93.204	0.427
comGC/cglC	Streptococcus pneumoniae TIGR4	45.833	93.204	0.427
comGC/cglC	Streptococcus pneumoniae Rx1	45.833	93.204	0.427
comYC	Streptococcus mutans UA140	48.315	86.408	0.417
comYC	Streptococcus mutans UA159	48.315	86.408	0.417
comGC	Bacillus subtilis subsp. subtilis str. 168	44.211	92.233	0.408
comYC	Streptococcus gordonii str. Challis substr. CH1	47.727	85.437	0.408
comYC	Streptococcus suis isolate S10	46.512	83.495	0.388
comGC/cglC	Streptococcus mitis NCTC 12261	48.193	80.583	0.388

Detailed information NTG0927413