Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   VXJ98_RS05400 Genome accession   NZ_CP142855
Coordinates   1102942..1103916 (-) Length   324 a.a.
NCBI ID   WP_017176236.1    Uniprot ID   -
Organism   Staphylococcus hominis strain Sh8213     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1097942..1108916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXJ98_RS05370 (VXJ98_05370) gcvT 1098502..1099593 (-) 1092 WP_017176243.1 glycine cleavage system aminomethyltransferase GcvT -
  VXJ98_RS05375 (VXJ98_05375) - 1099788..1100297 (-) 510 WP_017176242.1 shikimate kinase -
  VXJ98_RS05380 (VXJ98_05380) - 1100462..1100923 (-) 462 WP_232132980.1 competence type IV pilus minor pilin ComGF -
  VXJ98_RS05385 (VXJ98_05385) comGD 1101151..1101597 (-) 447 WP_256276197.1 competence type IV pilus minor pilin ComGD -
  VXJ98_RS05390 (VXJ98_05390) comGC 1101575..1101886 (-) 312 WP_017176238.1 competence type IV pilus major pilin ComGC Machinery gene
  VXJ98_RS05395 (VXJ98_05395) comGB 1101906..1102964 (-) 1059 WP_048681721.1 competence type IV pilus assembly protein ComGB -
  VXJ98_RS05400 (VXJ98_05400) comGA 1102942..1103916 (-) 975 WP_017176236.1 competence type IV pilus ATPase ComGA Machinery gene
  VXJ98_RS05405 (VXJ98_05405) - 1103967..1104593 (-) 627 WP_017176235.1 MBL fold metallo-hydrolase -
  VXJ98_RS05410 (VXJ98_05410) - 1104595..1104918 (-) 324 WP_017176234.1 MTH1187 family thiamine-binding protein -
  VXJ98_RS05415 (VXJ98_05415) - 1104918..1105904 (-) 987 WP_002449785.1 ROK family glucokinase -
  VXJ98_RS05420 (VXJ98_05420) - 1105901..1106104 (-) 204 WP_017176233.1 YqgQ family protein -
  VXJ98_RS05425 (VXJ98_05425) - 1106088..1107545 (-) 1458 WP_017176232.1 rhomboid family protein -
  VXJ98_RS05430 (VXJ98_05430) - 1107545..1108096 (-) 552 WP_017176231.1 5-formyltetrahydrofolate cyclo-ligase -
  VXJ98_RS05435 (VXJ98_05435) rpmG 1108307..1108456 (-) 150 WP_002449881.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36866.84 Da        Isoelectric Point: 8.4444

>NTDB_id=927414 VXJ98_RS05400 WP_017176236.1 1102942..1103916(-) (comGA) [Staphylococcus hominis strain Sh8213]
MKLLFQEIINKAISKNASDVHFIPSEDKVHIKFRVNDILETYEMFSNDIYEKLLIYMKFKANLDVSTHQIAQSGRYTYHA
KSIFYLRISTLPLSLGVESCVIRLIPQYFTSKREYKDFNDFKSLMNKKQGLILLTGPTGSGKSTLMYQLVLYAFQELNLN
VITIENPVEQLLKGITQVSVNHKAGIDYVSSFKAILRCDPDVILIGEIRDAEVAKCVIQASLSGHLVLTTMHSSNCKGAI
LRLLEMGISVQEISQAINVISNQRLVTTTSNQRKLVCESITNNQIQYFFEHNHTLPKTFNNLKEKLLSLSKEGLICEDVV
EKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=927414 VXJ98_RS05400 WP_017176236.1 1102942..1103916(-) (comGA) [Staphylococcus hominis strain Sh8213]
TTGAAATTATTATTTCAAGAAATAATTAATAAAGCAATTTCAAAAAATGCAAGTGACGTACACTTTATTCCTTCAGAGGA
TAAAGTACATATTAAATTCAGAGTGAATGATATATTAGAGACATATGAAATGTTTAGTAATGACATTTATGAAAAATTAT
TAATTTATATGAAATTTAAAGCAAATTTAGATGTATCAACACATCAAATAGCTCAAAGTGGTAGATATACTTATCATGCT
AAATCAATATTTTATTTAAGAATTTCTACTTTACCTTTGTCATTAGGAGTAGAAAGTTGTGTTATTAGACTTATCCCTCA
ATATTTCACTTCTAAAAGAGAGTATAAGGACTTTAATGACTTTAAATCTCTAATGAATAAAAAGCAAGGTCTCATTTTAC
TTACTGGTCCAACAGGTTCAGGTAAAAGTACTTTGATGTATCAATTAGTACTCTATGCTTTTCAAGAATTAAATTTAAAT
GTTATTACAATTGAAAATCCTGTTGAACAATTATTAAAAGGCATAACACAAGTGTCAGTAAATCATAAAGCCGGTATAGA
TTATGTTAGTTCATTTAAAGCAATATTAAGATGTGATCCAGATGTTATTTTAATTGGTGAAATTAGAGATGCTGAAGTGG
CAAAATGTGTTATTCAAGCAAGTTTAAGTGGTCATTTAGTGTTAACTACTATGCATTCAAGCAATTGTAAGGGCGCAATA
CTCAGATTGTTAGAGATGGGGATTAGTGTTCAAGAAATTTCACAAGCAATAAATGTTATTTCAAATCAAAGATTAGTTAC
AACTACTTCAAATCAAAGAAAGCTTGTTTGTGAGTCTATTACAAATAATCAAATTCAATATTTTTTTGAACATAACCATA
CGCTTCCTAAGACATTTAATAATTTAAAAGAAAAATTGTTATCGCTATCGAAAGAAGGTCTTATATGTGAAGATGTGGTT
GAAAAATATATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

69.136

100

0.691
  comGA Staphylococcus aureus N315

69.136

100

0.691