Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   VJ143_RS01580 Genome accession   NZ_CP142740
Coordinates   336976..338205 (-) Length   409 a.a.
NCBI ID   WP_262782508.1    Uniprot ID   -
Organism   Acinetobacter guillouiae strain 13-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 331976..343205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VJ143_RS01555 (VJ143_01555) - 333205..333528 (+) 324 WP_004718357.1 pyrimidine/purine nucleoside phosphorylase -
  VJ143_RS01560 (VJ143_01560) rlmB 333689..334444 (+) 756 WP_105714634.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  VJ143_RS01565 (VJ143_01565) - 334483..335394 (+) 912 WP_327858020.1 DMT family transporter -
  VJ143_RS01570 (VJ143_01570) coaE 335463..336062 (-) 600 WP_096732748.1 dephospho-CoA kinase -
  VJ143_RS01575 (VJ143_01575) pilD 336089..336970 (-) 882 WP_262782506.1 prepilin peptidase Machinery gene
  VJ143_RS01580 (VJ143_01580) pilC 336976..338205 (-) 1230 WP_262782508.1 type II secretion system F family protein Machinery gene
  VJ143_RS01585 (VJ143_01585) pilB 338233..339948 (-) 1716 WP_327858021.1 type IV-A pilus assembly ATPase PilB Machinery gene
  VJ143_RS01590 (VJ143_01590) tpiA 340226..341020 (+) 795 WP_327858022.1 triose-phosphate isomerase -
  VJ143_RS01595 (VJ143_01595) secG 341030..341371 (+) 342 WP_004718341.1 preprotein translocase subunit SecG -
  VJ143_RS01620 (VJ143_01620) rimP 342162..342686 (+) 525 WP_004718339.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45065.56 Da        Isoelectric Point: 9.9331

>NTDB_id=926634 VJ143_RS01580 WP_262782508.1 336976..338205(-) (pilC) [Acinetobacter guillouiae strain 13-3]
MAAKKAQMMPTFAYDGVDRKGIKVKGELPSRNMALAKVTLRKQGITIKTIREKKKNILEGLMKKGISTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPSMREIVLGIKSEVEGGNTFAGALKKYPRYFDSLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPMTVIAVAIIVTIILMVKVVPVFQGLFSSFGADLPAFTQMVVNMSNWMQSYWFILIIFIAVVIT
AFLEAKKRSKKFQDFLDRTALRLPIFGDLVYKAIIARYSRTLATTFAAGVPLIEALESTAGATNNVVYEQAVMKIREDVA
TGQQLNFAMRVTNKFPSMAIQMVAIGEESGALDAMLDKVATHFENEVDNAVDGLTSMMEPLIMAILGVLIGGLVIAMYLP
IFQMGSVVG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=926634 VJ143_RS01580 WP_262782508.1 336976..338205(-) (pilC) [Acinetobacter guillouiae strain 13-3]
ATGGCAGCTAAAAAAGCTCAAATGATGCCTACATTTGCTTATGACGGGGTTGATCGTAAAGGGATCAAGGTTAAAGGGGA
ATTACCTTCACGTAATATGGCACTTGCCAAAGTAACCTTACGAAAACAAGGCATCACCATTAAAACCATTCGAGAAAAAA
AGAAAAATATTCTTGAAGGTTTAATGAAAAAAGGCATTTCTACTTTAGATATTACCATTTTCACTCGTCAACTCGCCACA
ATGATGAAAGCGGGTGTGCCATTAGTGCAAAGTTTTGAAATTGTTGCAGAAGGACTAGAAAATCCCTCTATGCGTGAAAT
TGTACTGGGGATTAAAAGTGAAGTTGAAGGGGGAAATACCTTTGCTGGTGCATTAAAAAAATACCCTCGCTATTTTGACA
GCTTGTTTTGTTCATTGGTGGAATCTGGTGAACAATCTGGTGCTTTGGAAACCATGCTTGATCGTGTGGCGATCTATAAA
GAAAAAAGTGAATTATTGAAACAAAAAATTAAAAAAGCCATGAAATATCCAATGACTGTAATTGCAGTCGCAATTATCGT
TACTATTATTTTAATGGTGAAAGTGGTTCCTGTCTTTCAAGGCTTATTTAGCTCTTTTGGTGCAGATCTCCCCGCATTTA
CTCAAATGGTGGTGAATATGTCCAATTGGATGCAAAGTTATTGGTTTATTTTGATTATCTTTATTGCTGTTGTGATTACT
GCTTTTTTAGAAGCCAAAAAACGCAGTAAAAAATTTCAGGATTTTCTAGACCGAACAGCACTGAGACTGCCTATTTTTGG
CGATCTGGTTTATAAAGCCATCATTGCACGCTATAGCCGTACACTTGCCACAACATTTGCGGCAGGGGTCCCTTTAATCG
AAGCTTTAGAGTCAACAGCTGGTGCAACCAATAATGTGGTATATGAACAAGCGGTAATGAAAATTCGCGAGGATGTCGCC
ACTGGGCAACAATTGAACTTTGCCATGCGTGTCACCAATAAATTCCCCTCTATGGCCATTCAAATGGTGGCGATTGGAGA
AGAATCGGGTGCGCTTGATGCGATGTTAGATAAAGTTGCAACGCATTTTGAAAATGAAGTCGATAATGCTGTTGATGGTT
TAACCTCAATGATGGAGCCATTAATCATGGCGATATTAGGTGTTCTTATTGGTGGTCTAGTGATTGCGATGTATCTGCCT
ATTTTCCAAATGGGTTCAGTGGTTGGTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

87.01

99.756

0.868
  pilC Acinetobacter baylyi ADP1

83.578

99.756

0.834
  pilC Pseudomonas stutzeri DSM 10701

58.867

99.267

0.584
  pilC Legionella pneumophila strain ERS1305867

52.84

99.022

0.523
  pilG Neisseria gonorrhoeae MS11

47.236

97.311

0.46
  pilG Neisseria meningitidis 44/76-A

47.236

97.311

0.46
  pilC Vibrio cholerae strain A1552

42.157

99.756

0.421
  pilC Vibrio campbellii strain DS40M4

40.831

100

0.408
  pilC Thermus thermophilus HB27

36.908

98.044

0.362