Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   VJ143_RS01575 Genome accession   NZ_CP142740
Coordinates   336089..336970 (-) Length   293 a.a.
NCBI ID   WP_262782506.1    Uniprot ID   -
Organism   Acinetobacter guillouiae strain 13-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 331089..341970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VJ143_RS01555 (VJ143_01555) - 333205..333528 (+) 324 WP_004718357.1 pyrimidine/purine nucleoside phosphorylase -
  VJ143_RS01560 (VJ143_01560) rlmB 333689..334444 (+) 756 WP_105714634.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  VJ143_RS01565 (VJ143_01565) - 334483..335394 (+) 912 WP_327858020.1 DMT family transporter -
  VJ143_RS01570 (VJ143_01570) coaE 335463..336062 (-) 600 WP_096732748.1 dephospho-CoA kinase -
  VJ143_RS01575 (VJ143_01575) pilD 336089..336970 (-) 882 WP_262782506.1 prepilin peptidase Machinery gene
  VJ143_RS01580 (VJ143_01580) pilC 336976..338205 (-) 1230 WP_262782508.1 type II secretion system F family protein Machinery gene
  VJ143_RS01585 (VJ143_01585) pilB 338233..339948 (-) 1716 WP_327858021.1 type IV-A pilus assembly ATPase PilB Machinery gene
  VJ143_RS01590 (VJ143_01590) tpiA 340226..341020 (+) 795 WP_327858022.1 triose-phosphate isomerase -
  VJ143_RS01595 (VJ143_01595) secG 341030..341371 (+) 342 WP_004718341.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 32779.31 Da        Isoelectric Point: 7.8215

>NTDB_id=926633 VJ143_RS01575 WP_262782506.1 336089..336970(-) (pilD) [Acinetobacter guillouiae strain 13-3]
MNMFHDLLNFLIQSPIALYLTIGVLGLCVGSFLNVVIYRTPKMMEKEWRQEWHAECQLLAGSQQIVIDEEKLSLSQPAST
CPKCKTPIRWYQNIPIISWLVLRGKCASCQNPISIRYPLVELLTAVCSLTVVAVYGPTLEMVFGVLLTWVLITLTFIDFD
TQLLPDRFTLTLAAIGLGINSFHLYTTASAAIWGYIIGFLCLWIVYYLFKIVTGKEGMGYGDFKLLAALGAWMGPLMLPL
IILLSSVVGAIIGIILLKIRKENVPFAFGPYIAIAGWIAFLWGEQIMKVYLGQ

Nucleotide


Download         Length: 882 bp        

>NTDB_id=926633 VJ143_RS01575 WP_262782506.1 336089..336970(-) (pilD) [Acinetobacter guillouiae strain 13-3]
ATGAATATGTTCCATGATTTGTTAAATTTTCTGATTCAATCACCAATAGCACTCTATCTGACTATCGGTGTTTTAGGCTT
ATGTGTTGGTAGTTTTTTAAATGTAGTCATTTATCGCACCCCCAAGATGATGGAAAAAGAATGGCGGCAGGAATGGCATG
CAGAATGCCAATTACTGGCAGGTTCACAACAGATTGTGATTGATGAAGAAAAGCTCAGTCTCAGTCAACCAGCCTCTACC
TGTCCCAAATGTAAAACCCCAATTCGTTGGTATCAAAATATCCCCATCATCAGTTGGTTGGTTTTAAGAGGCAAATGCGC
TTCGTGTCAAAACCCGATTAGTATTCGTTATCCATTGGTTGAGCTTTTAACTGCGGTGTGTTCATTAACAGTCGTTGCTG
TTTATGGCCCCACTTTAGAAATGGTTTTTGGTGTGCTACTGACTTGGGTGCTGATCACGCTTACTTTTATTGATTTTGAC
ACTCAATTACTCCCAGATCGTTTTACCTTAACCTTAGCTGCAATAGGTTTAGGTATTAACTCATTTCATCTCTATACAAC
AGCAAGTGCTGCAATCTGGGGATATATTATTGGTTTCCTGTGTCTTTGGATTGTCTACTATCTATTTAAAATAGTGACAG
GCAAAGAAGGCATGGGCTATGGTGACTTTAAGCTTCTTGCTGCACTTGGCGCTTGGATGGGGCCCTTGATGTTACCATTA
ATTATCCTACTGTCTTCTGTAGTGGGTGCGATCATTGGTATTATTTTACTTAAAATTCGTAAAGAAAATGTCCCTTTTGC
CTTTGGTCCTTATATTGCAATTGCAGGATGGATTGCATTTTTATGGGGTGAGCAAATTATGAAAGTATATTTAGGTCAAT
AA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(146-254)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(24-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

72.917

98.294

0.717
  pilD Acinetobacter baumannii D1279779

72.569

98.294

0.713
  pilD Vibrio cholerae strain A1552

54.044

92.833

0.502
  pilD Vibrio campbellii strain DS40M4

53.875

92.491

0.498
  pilD Neisseria gonorrhoeae MS11

46.263

95.904

0.444