Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   VOI35_RS03720 Genome accession   NZ_CP142685
Coordinates   788266..789504 (-) Length   412 a.a.
NCBI ID   WP_407276547.1    Uniprot ID   -
Organism   Halothiobacillus sp. DCM-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 783266..794504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOI35_RS03695 (VOI35_03685) - 783941..785164 (+) 1224 WP_407276542.1 hypothetical protein -
  VOI35_RS03700 (VOI35_03690) - 785231..786211 (-) 981 WP_407276543.1 YgfZ/GcvT domain-containing protein -
  VOI35_RS03705 (VOI35_03695) - 786308..786724 (+) 417 WP_407276544.1 hypothetical protein -
  VOI35_RS03710 (VOI35_03700) coaE 786752..787375 (-) 624 WP_407276545.1 dephospho-CoA kinase -
  VOI35_RS03715 (VOI35_03705) pilD 787372..788256 (-) 885 WP_407276546.1 prepilin peptidase Machinery gene
  VOI35_RS03720 (VOI35_03710) pilC 788266..789504 (-) 1239 WP_407276547.1 type II secretion system F family protein Machinery gene
  VOI35_RS03725 (VOI35_03715) pilB 789516..791180 (-) 1665 WP_407276787.1 type IV-A pilus assembly ATPase PilB Machinery gene
  VOI35_RS03730 (VOI35_03720) - 791283..791702 (-) 420 WP_407276548.1 PAS domain-containing protein -
  VOI35_RS03735 (VOI35_03725) - 791763..792668 (-) 906 WP_407276549.1 MerR family transcriptional regulator -
  VOI35_RS03740 (VOI35_03730) - 792782..793576 (+) 795 WP_407276550.1 SDR family NAD(P)-dependent oxidoreductase -
  VOI35_RS03745 (VOI35_03735) - 793573..794007 (+) 435 WP_407276551.1 nuclear transport factor 2 family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45174.81 Da        Isoelectric Point: 9.8833

>NTDB_id=926413 VOI35_RS03720 WP_407276547.1 788266..789504(-) (pilC) [Halothiobacillus sp. DCM-1]
MATAVAAKKKAEENKVVFLYEAKNKDGKLVRGEMPAFNEMVVRGEVRRLGLTVVRIKKKPKPLFANTAQIKPKDIAVFAR
QLSTMMTAGLPIVQALDIIAQSAEKVAMKELVTTVKNDVESGMTLAGAMDKHRKYFDELFVNLVRAGEESGALELVLDRV
ATYKEKTESLKGKIKKALFYPIAVVVVAFIVTAILLIFVIPQFKELFDGFGASLPAFTLFVIGLSEAFQKYWYLIFGSIG
VAIFLFVYVKRRSDPFNHFLDRMILKMPIFGPLTEKAAIARFARTLSTMFSAGVPLVEAMPPTAGSTGNAIFKDAVMNIR
DVIAAGSPLRVGMQQSKLFPVMVVQMVAIGEETGALDTMLGKVADMYEEEVDNMVDAMSSLMEPLIMAFLGVVVGGLVIA
MYLPIFKLGSVV

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=926413 VOI35_RS03720 WP_407276547.1 788266..789504(-) (pilC) [Halothiobacillus sp. DCM-1]
ATGGCAACGGCAGTCGCTGCAAAAAAGAAAGCGGAAGAAAATAAAGTTGTCTTTCTTTACGAAGCAAAAAACAAGGATGG
CAAGCTCGTGCGGGGCGAAATGCCCGCCTTCAACGAAATGGTGGTTCGCGGTGAGGTGCGCCGACTCGGCTTGACGGTTG
TACGCATCAAGAAAAAGCCCAAACCGCTATTTGCCAATACCGCACAAATCAAACCGAAAGACATCGCCGTTTTCGCCCGC
CAGCTGTCCACCATGATGACGGCGGGATTGCCGATCGTACAGGCGCTCGACATCATCGCGCAGAGTGCGGAAAAAGTGGC
GATGAAAGAGCTTGTCACCACCGTGAAGAACGATGTCGAAAGCGGGATGACGCTCGCCGGCGCCATGGATAAACACCGCA
AGTATTTTGATGAGCTGTTTGTGAACCTGGTGCGCGCCGGTGAAGAATCCGGTGCGCTCGAACTGGTGCTCGACCGGGTC
GCCACCTATAAGGAAAAAACCGAATCGCTGAAAGGCAAAATCAAGAAAGCGCTGTTCTACCCGATTGCCGTCGTGGTGGT
CGCTTTCATCGTCACGGCCATCTTGTTGATTTTCGTGATTCCACAATTCAAGGAACTGTTCGATGGATTTGGCGCCAGCC
TGCCGGCTTTCACCCTGTTCGTGATTGGCCTGTCGGAAGCATTCCAGAAATATTGGTACCTGATCTTCGGCAGCATAGGC
GTAGCGATTTTTCTATTCGTCTATGTCAAACGCCGCTCGGATCCCTTCAACCACTTTCTCGACCGCATGATCCTCAAAAT
GCCGATCTTCGGCCCACTGACCGAAAAGGCGGCGATCGCCCGCTTTGCCCGCACCTTGAGCACCATGTTCTCCGCCGGGG
TTCCACTGGTGGAAGCCATGCCCCCGACCGCCGGCTCCACGGGCAATGCCATCTTCAAAGATGCCGTGATGAACATTCGC
GATGTGATTGCCGCTGGTTCGCCCCTGCGGGTCGGCATGCAGCAATCCAAACTGTTCCCCGTCATGGTGGTGCAAATGGT
GGCGATCGGGGAAGAAACCGGCGCGCTCGACACCATGCTCGGCAAAGTGGCCGATATGTACGAAGAAGAAGTTGACAACA
TGGTCGATGCCATGTCCAGCTTGATGGAACCCCTGATCATGGCCTTCCTCGGCGTGGTGGTCGGCGGGCTCGTCATCGCC
ATGTACCTGCCGATCTTCAAACTCGGCTCGGTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(78-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

54.774

96.602

0.529
  pilC Pseudomonas stutzeri DSM 10701

51.98

98.058

0.51
  pilC Acinetobacter baumannii D1279779

52.393

96.359

0.505
  pilC Acinetobacter baylyi ADP1

52.261

96.602

0.505
  pilC Vibrio cholerae strain A1552

44.697

96.117

0.43
  pilC Vibrio campbellii strain DS40M4

43.75

97.087

0.425
  pilG Neisseria meningitidis 44/76-A

43.609

96.845

0.422
  pilG Neisseria gonorrhoeae MS11

43.358

96.845

0.42
  pilC Thermus thermophilus HB27

41.103

96.845

0.398