Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   VKP40_RS00730 Genome accession   NZ_CP142355
Coordinates   112364..112759 (+) Length   131 a.a.
NCBI ID   WP_021733281.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain A946     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 107364..117759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP40_RS00700 (VKP40_00700) - 108229..108537 (+) 309 WP_011017251.1 hypothetical protein -
  VKP40_RS00705 (VKP40_00705) proC 108620..109390 (-) 771 WP_002986527.1 pyrroline-5-carboxylate reductase -
  VKP40_RS00710 (VKP40_00710) pepA 109438..110505 (-) 1068 WP_014635229.1 glutamyl aminopeptidase -
  VKP40_RS00715 (VKP40_00715) - 110970..111254 (+) 285 WP_014635230.1 DUF4651 domain-containing protein -
  VKP40_RS00720 (VKP40_00720) - 111251..111568 (+) 318 WP_002986515.1 thioredoxin family protein -
  VKP40_RS00725 (VKP40_00725) ytpR 111586..112212 (+) 627 WP_002986511.1 YtpR family tRNA-binding protein -
  VKP40_RS00730 (VKP40_00730) ssbA 112364..112759 (+) 396 WP_021733281.1 single-stranded DNA-binding protein Machinery gene
  VKP40_RS00735 (VKP40_00735) - 113019..113660 (-) 642 WP_002986504.1 deoxynucleoside kinase -
  VKP40_RS00740 (VKP40_00740) dusB 113680..114657 (-) 978 WP_002987812.1 tRNA dihydrouridine synthase DusB -
  VKP40_RS00745 (VKP40_00745) hslO 114644..115516 (-) 873 WP_023079883.1 Hsp33 family molecular chaperone HslO -
  VKP40_RS00750 (VKP40_00750) nra 115642..117177 (-) 1536 WP_030126927.1 transcriptional regulator Nra -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14852.00 Da        Isoelectric Point: 8.0157

>NTDB_id=925254 VKP40_RS00730 WP_021733281.1 112364..112759(+) (ssbA) [Streptococcus pyogenes strain A946]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGEFRTR
KYDKDGQVHYVTEVLCQSFQLLESRTQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=925254 VKP40_RS00730 WP_021733281.1 112364..112759(+) (ssbA) [Streptococcus pyogenes strain A946]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCGGATTTTATCTCTGTTGTTGTTT
GGGGAAAGTTAGCTGAAACCTTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAATTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTACTCA
GCGTGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

72.519

100

0.725
  ssbB Streptococcus sobrinus strain NIDR 6715-7

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae Rx1

68.702

100

0.687
  ssbB/cilA Streptococcus pneumoniae D39

68.702

100

0.687
  ssbB/cilA Streptococcus pneumoniae R6

68.702

100

0.687
  ssbB/cilA Streptococcus mitis NCTC 12261

68.702

100

0.687
  ssbB/cilA Streptococcus pneumoniae TIGR4

68.702

100

0.687
  ssbB/cilA Streptococcus mitis SK321

67.939

100

0.679
  ssbB Lactococcus lactis subsp. cremoris KW2

61.404

87.023

0.534
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.664

81.679

0.389