Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AB5J56_RS29555 Genome accession   NZ_CP163435
Coordinates   6623761..6624441 (+) Length   226 a.a.
NCBI ID   WP_369236754.1    Uniprot ID   -
Organism   Streptomyces sp. R21     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6618761..6629441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J56_RS29545 (AB5J56_29545) tig 6621257..6622648 (+) 1392 WP_369236752.1 trigger factor -
  AB5J56_RS29550 (AB5J56_29550) clpP 6623070..6623675 (+) 606 WP_369242877.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5J56_RS29555 (AB5J56_29555) clpP 6623761..6624441 (+) 681 WP_369236754.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5J56_RS29560 (AB5J56_29560) clpX 6624602..6625888 (+) 1287 WP_369236756.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  AB5J56_RS29565 (AB5J56_29565) - 6626471..6627430 (-) 960 WP_369236758.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24955.41 Da        Isoelectric Point: 4.7288

>NTDB_id=925198 AB5J56_RS29555 WP_369236754.1 6623761..6624441(+) (clpP) [Streptomyces sp. R21]
MNDFPGSGLHARTQAEYTGPRAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEEMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIISTRKMNNSAVV

Nucleotide


Download         Length: 681 bp        

>NTDB_id=925198 AB5J56_RS29555 WP_369236754.1 6623761..6624441(+) (clpP) [Streptomyces sp. R21]
GTGAACGACTTCCCCGGCAGCGGCCTCCACGCCCGCACGCAGGCCGAGTACACCGGCCCTCGCGCGGAGTCCCGCTACGT
CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGTGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGTGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCCTTCACGGCTCTCACGGCCATTTACGACACGATGCAGTT
CGTGAAGCCCGATATTCAGACAGTTTGCATGGGCCAGGCGGCCTCGGCCGCCGCGATCCTGCTGGCCGCCGGTACGCCGG
GCAAGCGCATGGCACTTCCGAACGCCCGTGTGCTGATCCACCAGCCCTACAGCGAGACGGGCCGAGGCCAGGTCTCGGAC
CTCGAGATCGCGGCGAACGAGATCCTCCGGATGCGCGCTCAGCTCGAAGAGATGCTGGCCAAGCACTCGACGACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTGACGGCCGAGGACGCGCTCGCGTACGGCCTGATCGACCAGA
TCATCTCCACCCGGAAGATGAACAACTCCGCGGTCGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

84.071

0.438
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.468

83.186

0.412
  clpP Streptococcus thermophilus LMD-9

46.154

86.283

0.398
  clpP Streptococcus thermophilus LMG 18311

46.154

86.283

0.398
  clpP Streptococcus mutans UA159

45.226

88.053

0.398
  clpP Lactococcus lactis subsp. cremoris KW2

45.226

88.053

0.398
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.221

88.053

0.389
  clpP Streptococcus pyogenes MGAS315

45.128

86.283

0.389
  clpP Streptococcus pyogenes JRS4

45.128

86.283

0.389
  clpP Streptococcus pneumoniae TIGR4

44.388

86.726

0.385
  clpP Streptococcus pneumoniae R6

44.388

86.726

0.385
  clpP Streptococcus pneumoniae Rx1

44.388

86.726

0.385
  clpP Streptococcus pneumoniae D39

44.388

86.726

0.385