Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   VKP38_RS00655 Genome accession   NZ_CP142352
Coordinates   104291..105229 (+) Length   312 a.a.
NCBI ID   WP_023079010.1    Uniprot ID   A0A8B6IZ99
Organism   Streptococcus pyogenes strain 2907-97     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 99291..110229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP38_RS00645 (VKP38_00645) rpoC 100040..103681 (+) 3642 WP_011528160.1 DNA-directed RNA polymerase subunit beta' -
  VKP38_RS00650 (VKP38_00650) - 103833..104198 (+) 366 WP_002986560.1 DUF1033 family protein -
  VKP38_RS00655 (VKP38_00655) comYA 104291..105229 (+) 939 WP_023079010.1 competence type IV pilus ATPase ComGA Machinery gene
  VKP38_RS00660 (VKP38_00660) comYB 105165..106199 (+) 1035 WP_011054115.1 competence type IV pilus assembly protein ComGB Machinery gene
  VKP38_RS00665 (VKP38_00665) comYC 106201..106527 (+) 327 WP_002986552.1 competence type IV pilus major pilin ComGC Machinery gene
  VKP38_RS00670 (VKP38_00670) comGD 106502..106930 (+) 429 WP_002986548.1 competence type IV pilus minor pilin ComGD -
  VKP38_RS00675 (VKP38_00675) comGE 106887..107171 (+) 285 WP_032465969.1 competence type IV pilus minor pilin ComGE -
  VKP38_RS00680 (VKP38_00680) comYF 107164..107598 (+) 435 WP_002992738.1 competence type IV pilus minor pilin ComGF Machinery gene
  VKP38_RS00685 (VKP38_00685) comGG 107582..107908 (+) 327 WP_010921801.1 competence type IV pilus minor pilin ComGG -
  VKP38_RS00690 (VKP38_00690) comYH 108006..108959 (+) 954 WP_023610878.1 class I SAM-dependent methyltransferase Machinery gene
  VKP38_RS00695 (VKP38_00695) - 109018..110214 (+) 1197 WP_010921803.1 acetate kinase -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35086.41 Da        Isoelectric Point: 9.1037

>NTDB_id=925079 VKP38_RS00655 WP_023079010.1 104291..105229(+) (comYA) [Streptococcus pyogenes strain 2907-97]
MVQALAKAILAKAEQVQAQDIYILPRADQYDLFLRIGDERRLVDVYQSDRMAPLISHFKFVAGMIVGEKRRCQVGSCDYK
LSKDKQLSLRLSSVGDYRGQESLVIRLLHHQNKSVHYWFDGLTKVANQVGGRGLYLFAGPVGSGKTTLMYQLISNYHQKA
QVISIEDPVEIKNHQILQLQVNDDIGMTYDNLIKLSLRHRPDILVIGEIRDSQTARAVIRASLTGAMVFSTVHAKSISGV
YVRLLELGVTKAELSNCLALIAYQRLLNGGALIDSTQNEFEYYSSSNWNQQIDQLLEAGHLNPKQAKLEKII

Nucleotide


Download         Length: 939 bp        

>NTDB_id=925079 VKP38_RS00655 WP_023079010.1 104291..105229(+) (comYA) [Streptococcus pyogenes strain 2907-97]
ATGGTACAAGCATTAGCAAAAGCTATTCTAGCAAAAGCTGAACAGGTTCAGGCACAAGATATTTATATTTTGCCAAGAGC
AGATCAATATGATCTTTTTTTACGAATAGGAGATGAAAGGAGATTAGTTGATGTTTATCAGAGCGATCGGATGGCTCCTC
TTATTAGTCACTTTAAATTCGTTGCAGGAATGATAGTTGGTGAAAAGAGACGTTGTCAGGTGGGTTCATGTGATTATAAG
CTTAGTAAAGATAAGCAGTTATCTTTGCGCTTATCTAGCGTGGGTGATTATCGCGGGCAAGAAAGCTTAGTGATTCGTCT
GCTTCATCATCAAAATAAAAGTGTACATTATTGGTTTGATGGATTGACAAAAGTAGCCAATCAAGTTGGCGGTAGAGGGT
TGTATTTATTTGCAGGACCAGTTGGGTCTGGGAAGACAACCTTGATGTACCAGCTGATTTCGAATTATCATCAAAAAGCA
CAGGTTATTAGTATAGAAGATCCTGTAGAAATTAAAAATCACCAGATTTTACAATTACAAGTGAATGATGATATTGGTAT
GACTTATGACAATTTGATCAAACTGTCTTTACGCCATCGACCAGATATTTTAGTTATTGGTGAGATTCGAGATAGTCAAA
CAGCAAGAGCCGTTATTAGGGCTAGTCTAACAGGTGCCATGGTTTTTTCAACGGTTCACGCTAAAAGTATCTCGGGTGTT
TATGTAAGATTGTTAGAACTTGGTGTAACGAAAGCAGAACTGTCTAATTGCTTAGCATTAATTGCTTACCAAAGGTTACT
TAATGGAGGAGCATTGATTGACTCTACTCAAAACGAATTTGAATATTATTCCTCATCGAACTGGAATCAACAAATTGATC
AGCTTCTTGAGGCAGGACATCTCAATCCCAAGCAAGCTAAGCTTGAAAAAATTATCTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8B6IZ99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA140

61.415

99.679

0.612
  comYA Streptococcus mutans UA159

61.415

99.679

0.612
  comYA Streptococcus gordonii str. Challis substr. CH1

60.772

99.679

0.606
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

60.323

99.359

0.599
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

59.486

99.679

0.593
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

58.842

99.679

0.587
  comGA/cglA/cilD Streptococcus pneumoniae D39

58.842

99.679

0.587
  comGA/cglA/cilD Streptococcus pneumoniae R6

58.842

99.679

0.587
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

58.842

99.679

0.587
  comGA Lactococcus lactis subsp. cremoris KW2

50.482

99.679

0.503
  comGA Latilactobacillus sakei subsp. sakei 23K

39.31

92.949

0.365