Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   VKP55_RS00970 Genome accession   NZ_CP142351
Coordinates   152074..152469 (+) Length   131 a.a.
NCBI ID   WP_002987809.1    Uniprot ID   Q1JNV8
Organism   Streptococcus pyogenes strain SS1366     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 147074..157469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP55_RS00940 (VKP55_00940) - 147940..148248 (+) 309 WP_326674286.1 hypothetical protein -
  VKP55_RS00945 (VKP55_00945) proC 148331..149101 (-) 771 WP_002986527.1 pyrroline-5-carboxylate reductase -
  VKP55_RS00950 (VKP55_00950) pepA 149149..150216 (-) 1068 WP_115219557.1 glutamyl aminopeptidase -
  VKP55_RS00955 (VKP55_00955) - 150681..150965 (+) 285 WP_002992749.1 DUF4651 domain-containing protein -
  VKP55_RS00960 (VKP55_00960) - 150962..151279 (+) 318 WP_014635231.1 thioredoxin family protein -
  VKP55_RS00965 (VKP55_00965) ytpR 151297..151923 (+) 627 WP_002986511.1 YtpR family tRNA-binding protein -
  VKP55_RS00970 (VKP55_00970) ssbA 152074..152469 (+) 396 WP_002987809.1 single-stranded DNA-binding protein Machinery gene
  VKP55_RS00975 (VKP55_00975) - 152729..153370 (-) 642 WP_002986504.1 deoxynucleoside kinase -
  VKP55_RS00980 (VKP55_00980) dusB 153390..154367 (-) 978 WP_076634042.1 tRNA dihydrouridine synthase DusB -
  VKP55_RS00985 (VKP55_00985) hslO 154354..155226 (-) 873 WP_065359307.1 Hsp33 family molecular chaperone HslO -
  VKP55_RS00990 (VKP55_00990) rofA 155373..156866 (-) 1494 WP_076634041.1 transcriptional regulator RofA -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14769.92 Da        Isoelectric Point: 8.0157

>NTDB_id=925032 VKP55_RS00970 WP_002987809.1 152074..152469(+) (ssbA) [Streptococcus pyogenes strain SS1366]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLISIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=925032 VKP55_RS00970 WP_002987809.1 152074..152469(+) (ssbA) [Streptococcus pyogenes strain SS1366]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCTGATTTTATTTCAGTTGTTGTTT
GGGGAAAGTTAGCAGAAACTCTGGTTTCTTATGCTAGCAAAGGTAGTTTGATATCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
GCGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1JNV8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae D39

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae R6

70.992

100

0.71
  ssbB/cilA Streptococcus mitis NCTC 12261

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.992

100

0.71
  ssbB/cilA Streptococcus mitis SK321

70.229

100

0.702
  ssbB Lactococcus lactis subsp. cremoris KW2

63.158

87.023

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397