Detailed information NTG0092409

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: OCU50_RS11705
• Genome accession: NZ_AP025514
• Coordinates: 2619557..2620786 (+)
• Length: 409 a.a.
• NCBI ID: WP_060468584.1
• Uniprot ID: A0A109D838
• Organism: Vibrio toranzoniae strain CECT 7225
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2614557..2625786

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCU50_RS11685	ampD	2615612..2616212 (-)	601	Protein_2243	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
OCU50_RS11690	nadC	2616296..2617186 (+)	891	WP_060468581.1	carboxylating nicotinate-nucleotide diphosphorylase	-
OCU50_RS11695	pilA	2617443..2617853 (+)	411	WP_060468582.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
OCU50_RS11700	pilB	2617856..2619541 (+)	1686	WP_060468583.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OCU50_RS11705	pilC	2619557..2620786 (+)	1230	WP_060468584.1	type II secretion system F family protein	Machinery gene
OCU50_RS11710	pilD	2620854..2621723 (+)	870	WP_060468585.1	A24 family peptidase	Machinery gene
OCU50_RS11715	coaE	2621726..2622340 (+)	615	WP_060468586.1	dephospho-CoA kinase	-
OCU50_RS11720	zapD	2622367..2623107 (+)	741	WP_029627015.1	cell division protein ZapD	-
OCU50_RS11725	yacG	2623188..2623385 (+)	198	WP_017056605.1	DNA gyrase inhibitor YacG	-
OCU50_RS11730	rplS	2623579..2623932 (-)	354	WP_046223309.1	50S ribosomal protein L19	-
OCU50_RS11735	trmD	2623992..2624732 (-)	741	WP_017629426.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
OCU50_RS11740	rimM	2624759..2625313 (-)	555	WP_017056602.1	ribosome maturation factor RimM	-
OCU50_RS11745	rpsP	2625338..2625586 (-)	249	WP_004735508.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 409 a.a.
• Molecular weight: 45393.48 Da
• Isoelectric Point: 10.1782

>NTDB_id=92409 OCU50_RS11705 WP_060468584.1 2619557..2620786(+) (pilC) [Vibrio toranzoniae strain CECT 7225]
MSIQPKQSQLKSYHWRGINSSGKKVSGQTLALTELEVREKLNEQHIQIKKIKKKSISAITRLTHRVKAKDITILTRQLAT
MLTTGVPIVQAIKLVSDNHRKAEMKSILSHICKGIEAGTPISRAMRTASSHFDELYTDLVATGELSGNLAQVFDRLATYR
EKSEQLRSKVIKALIYPAMVVLVALSVSYLMLTVVIPEFESMFAGFGADLPWFTQQVLQLSHWMQAYSLYALIAVSVVMV
SFKLLRKRSYSLRLTTSRLSLKFPILGTILSKASIAKFSRTLSTSFSSGIPILTSLKTTAKTAGNLHYEVAIGEVHRETA
AGMPMYIAMRNTDVFPEMVLQMVMIGEESGNLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLP
IFNLMSVLG

Nucleotide

• Length: 1230 bp

>NTDB_id=92409 OCU50_RS11705 WP_060468584.1 2619557..2620786(+) (pilC) [Vibrio toranzoniae strain CECT 7225]
ATGAGTATTCAGCCCAAACAGTCACAATTAAAAAGCTACCATTGGAGAGGTATAAATAGCTCAGGTAAGAAAGTGTCTGG
CCAAACTTTAGCGTTAACCGAATTGGAAGTACGAGAGAAGCTCAATGAACAGCATATCCAGATAAAAAAAATCAAAAAGA
AAAGTATCTCGGCCATTACACGCTTAACGCATCGCGTCAAAGCAAAAGACATCACTATTTTGACTCGCCAACTTGCCACT
ATGCTAACCACTGGTGTGCCCATCGTACAGGCGATTAAATTAGTATCAGATAACCACCGCAAAGCTGAAATGAAATCTAT
TCTGTCGCATATCTGTAAAGGCATCGAAGCCGGCACCCCTATTTCAAGAGCGATGCGTACGGCCAGTAGCCACTTTGATG
AGCTCTATACCGACTTAGTCGCAACTGGCGAACTTTCAGGTAACCTTGCGCAAGTCTTTGATCGCTTAGCGACATATCGA
GAAAAGAGTGAGCAACTCCGCTCAAAAGTCATCAAAGCACTCATTTACCCTGCTATGGTGGTGTTAGTTGCCTTATCGGT
TTCTTACCTAATGCTAACCGTGGTTATTCCAGAATTTGAATCCATGTTTGCAGGCTTTGGCGCTGATCTCCCTTGGTTTA
CCCAGCAGGTTTTGCAGTTATCACATTGGATGCAAGCTTATAGTCTGTACGCTTTGATTGCCGTTAGTGTTGTAATGGTT
AGTTTTAAATTACTGCGTAAGCGCTCTTACTCACTCAGATTAACCACCAGCCGACTTAGTTTAAAATTTCCTATACTCGG
TACGATTCTATCTAAAGCTTCTATCGCCAAATTCAGTCGAACTCTTTCTACTAGTTTCAGTTCCGGTATCCCGATCCTGA
CTAGCCTTAAAACCACGGCAAAAACCGCGGGTAACCTTCATTATGAGGTTGCGATTGGAGAAGTTCACCGTGAAACGGCC
GCAGGTATGCCAATGTATATCGCGATGCGTAATACAGACGTGTTCCCTGAAATGGTGCTACAAATGGTGATGATTGGTGA
GGAATCGGGAAATTTAGACGACATGCTCAACAAAGTTGCGACTATTTATGAATTTGAAGTCGACAATACCGTTGATAACT
TAGGTAAGATTTTGGAACCGCTGATCATTGTCTTTCTGGGCACCGTTGTAGGAGGGCTTGTAGTCGCAATGTACTTACCA
ATCTTTAATCTAATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (278-400)

• Type II secretion system (T2SS), protein F (T2SSF) (75-197)

3D structure

• AlphaFold DB: A0A109D838

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Vibrio cholerae strain A1552	80.5	97.8	0.787
pilC	Vibrio campbellii strain DS40M4	74.564	98.044	0.731
pilC	Legionella pneumophila strain ERS1305867	43.609	97.555	0.425
pilC	Acinetobacter baumannii D1279779	42.574	98.778	0.421
pilG	Neisseria gonorrhoeae MS11	41.791	98.289	0.411
pilG	Neisseria meningitidis 44/76-A	41.542	98.289	0.408
pilC	Acinetobacter baylyi ADP1	41.562	97.066	0.403
pilC	Pseudomonas stutzeri DSM 10701	41.162	96.822	0.399