Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | OCU50_RS11695 | Genome accession | NZ_AP025514 |
| Coordinates | 2617443..2617853 (+) | Length | 136 a.a. |
| NCBI ID | WP_060468582.1 | Uniprot ID | A0A109D833 |
| Organism | Vibrio toranzoniae strain CECT 7225 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2612443..2622853
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCU50_RS11680 | pdhR | 2614369..2615130 (-) | 762 | WP_060468580.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| OCU50_RS11685 | ampD | 2615612..2616212 (-) | 601 | Protein_2243 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| OCU50_RS11690 | nadC | 2616296..2617186 (+) | 891 | WP_060468581.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| OCU50_RS11695 | pilA | 2617443..2617853 (+) | 411 | WP_060468582.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| OCU50_RS11700 | pilB | 2617856..2619541 (+) | 1686 | WP_060468583.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| OCU50_RS11705 | pilC | 2619557..2620786 (+) | 1230 | WP_060468584.1 | type II secretion system F family protein | Machinery gene |
| OCU50_RS11710 | pilD | 2620854..2621723 (+) | 870 | WP_060468585.1 | A24 family peptidase | Machinery gene |
| OCU50_RS11715 | coaE | 2621726..2622340 (+) | 615 | WP_060468586.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 14379.27 Da Isoelectric Point: 5.0489
>NTDB_id=92407 OCU50_RS11695 WP_060468582.1 2617443..2617853(+) (pilA) [Vibrio toranzoniae strain CECT 7225]
MNNKRTNQKGFTLIELMIVVAVIGVLSAIAVPQYQNYVKKSALGTALASVTAYKTIIEDNIAFENQFPTISAAFGIGTIN
ATSGGVDTTQTVVAEIREGSGTGTKVQLSRDSDGLWTCGHSQSDIKLTGCEYDSAI
MNNKRTNQKGFTLIELMIVVAVIGVLSAIAVPQYQNYVKKSALGTALASVTAYKTIIEDNIAFENQFPTISAAFGIGTIN
ATSGGVDTTQTVVAEIREGSGTGTKVQLSRDSDGLWTCGHSQSDIKLTGCEYDSAI
Nucleotide
Download Length: 411 bp
>NTDB_id=92407 OCU50_RS11695 WP_060468582.1 2617443..2617853(+) (pilA) [Vibrio toranzoniae strain CECT 7225]
ATGAACAACAAAAGAACAAATCAGAAAGGTTTTACCTTAATTGAATTGATGATTGTAGTGGCTGTAATTGGGGTACTTTC
AGCTATTGCTGTACCTCAATATCAAAACTACGTAAAAAAAAGTGCGCTTGGGACGGCATTAGCTTCGGTTACAGCCTATA
AAACGATCATTGAAGACAATATAGCCTTTGAAAATCAATTCCCTACGATTTCAGCTGCATTTGGTATCGGAACTATCAAT
GCTACATCTGGAGGGGTTGATACAACACAGACTGTGGTAGCAGAAATACGAGAAGGTTCTGGAACAGGTACTAAAGTTCA
ACTGTCCAGAGATAGTGATGGGCTTTGGACTTGTGGCCATAGCCAAAGCGATATCAAATTAACGGGTTGTGAATACGATA
GTGCTATCTAG
ATGAACAACAAAAGAACAAATCAGAAAGGTTTTACCTTAATTGAATTGATGATTGTAGTGGCTGTAATTGGGGTACTTTC
AGCTATTGCTGTACCTCAATATCAAAACTACGTAAAAAAAAGTGCGCTTGGGACGGCATTAGCTTCGGTTACAGCCTATA
AAACGATCATTGAAGACAATATAGCCTTTGAAAATCAATTCCCTACGATTTCAGCTGCATTTGGTATCGGAACTATCAAT
GCTACATCTGGAGGGGTTGATACAACACAGACTGTGGTAGCAGAAATACGAGAAGGTTCTGGAACAGGTACTAAAGTTCA
ACTGTCCAGAGATAGTGATGGGCTTTGGACTTGTGGCCATAGCCAAAGCGATATCAAATTAACGGGTTGTGAATACGATA
GTGCTATCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae strain A1552 |
49.315 |
100 |
0.529 |
| pilA | Vibrio cholerae C6706 |
49.315 |
100 |
0.529 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
49.315 |
100 |
0.529 |
| pilA | Pseudomonas aeruginosa PAK |
41.007 |
100 |
0.419 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
37.226 |
100 |
0.375 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
37.879 |
97.059 |
0.368 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40.496 |
88.971 |
0.36 |