Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | OCV49_RS02585 | Genome accession | NZ_AP025499 |
| Coordinates | 510275..510685 (-) | Length | 136 a.a. |
| NCBI ID | WP_192852301.1 | Uniprot ID | - |
| Organism | Vibrio lentus strain LMG 21034 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 505275..515685
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCV49_RS02565 | coaE | 505790..506404 (-) | 615 | WP_192852304.1 | dephospho-CoA kinase | - |
| OCV49_RS02570 | pilD | 506407..507276 (-) | 870 | WP_192852303.1 | A24 family peptidase | Machinery gene |
| OCV49_RS02575 | pilC | 507345..508574 (-) | 1230 | WP_102267283.1 | type II secretion system F family protein | Machinery gene |
| OCV49_RS02580 | pilB | 508589..510274 (-) | 1686 | WP_192852302.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| OCV49_RS02585 | pilA | 510275..510685 (-) | 411 | WP_192852301.1 | pilin | Machinery gene |
| OCV49_RS02590 | nadC | 510940..511830 (-) | 891 | WP_017079961.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| OCV49_RS02595 | ampD | 511914..512513 (+) | 600 | WP_192852300.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| OCV49_RS02600 | pdhR | 512997..513758 (+) | 762 | WP_009847596.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 14157.97 Da Isoelectric Point: 5.7709
>NTDB_id=92186 OCV49_RS02585 WP_192852301.1 510275..510685(-) (pilA) [Vibrio lentus strain LMG 21034]
MNNKSKRTNQKGFTLIELMIVVAVIGVLSAIAVPQYQDYVKKSALGAALASVTAYKTNIEDSIAFENEFPAISAAFGIGT
INSTSAAITTTGQNTIVATVTEGAGENATVTLTRQNATGEWSCAHNQSPINLTGCS
MNNKSKRTNQKGFTLIELMIVVAVIGVLSAIAVPQYQDYVKKSALGAALASVTAYKTNIEDSIAFENEFPAISAAFGIGT
INSTSAAITTTGQNTIVATVTEGAGENATVTLTRQNATGEWSCAHNQSPINLTGCS
Nucleotide
Download Length: 411 bp
>NTDB_id=92186 OCV49_RS02585 WP_192852301.1 510275..510685(-) (pilA) [Vibrio lentus strain LMG 21034]
ATGAATAACAAAAGTAAAAGAACAAATCAGAAAGGTTTCACGCTAATTGAGTTGATGATTGTAGTAGCCGTGATTGGGGT
TCTTTCTGCTATTGCGGTACCTCAATATCAAGATTACGTAAAGAAAAGTGCTTTGGGTGCAGCTTTAGCTTCCGTAACTG
CATATAAAACAAATATCGAAGATTCAATCGCGTTTGAAAATGAATTCCCGGCAATTTCAGCCGCATTTGGTATTGGTACT
ATTAACTCTACATCTGCCGCGATCACAACAACCGGACAAAACACAATAGTTGCAACAGTCACCGAAGGCGCAGGGGAAAA
TGCCACTGTAACGTTAACTAGACAAAATGCTACCGGCGAATGGTCATGTGCCCATAACCAAAGCCCAATTAATTTAACAG
GTTGCTCATAA
ATGAATAACAAAAGTAAAAGAACAAATCAGAAAGGTTTCACGCTAATTGAGTTGATGATTGTAGTAGCCGTGATTGGGGT
TCTTTCTGCTATTGCGGTACCTCAATATCAAGATTACGTAAAGAAAAGTGCTTTGGGTGCAGCTTTAGCTTCCGTAACTG
CATATAAAACAAATATCGAAGATTCAATCGCGTTTGAAAATGAATTCCCGGCAATTTCAGCCGCATTTGGTATTGGTACT
ATTAACTCTACATCTGCCGCGATCACAACAACCGGACAAAACACAATAGTTGCAACAGTCACCGAAGGCGCAGGGGAAAA
TGCCACTGTAACGTTAACTAGACAAAATGCTACCGGCGAATGGTCATGTGCCCATAACCAAAGCCCAATTAATTTAACAG
GTTGCTCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
48.611 |
100 |
0.515 |
| pilA | Vibrio cholerae strain A1552 |
48.611 |
100 |
0.515 |
| pilA | Vibrio cholerae C6706 |
48.611 |
100 |
0.515 |
| pilA | Pseudomonas aeruginosa PAK |
41.497 |
100 |
0.449 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
47.154 |
90.441 |
0.426 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
39.161 |
100 |
0.412 |