Detailed information NTG0092183

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OCV49_RS02570
• Genome accession: NZ_AP025499
• Coordinates: 506407..507276 (-)
• Length: 289 a.a.
• NCBI ID: WP_192852303.1
• Uniprot ID: -
• Organism: Vibrio lentus strain LMG 21034
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 501407..512276

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCV49_RS02535	rpsP	502270..502518 (+)	249	WP_004735508.1	30S ribosomal protein S16	-
OCV49_RS02540	rimM	502545..503099 (+)	555	WP_009847609.1	ribosome maturation factor RimM	-
OCV49_RS02545	trmD	503126..503866 (+)	741	WP_009847608.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
OCV49_RS02550	rplS	503926..504279 (+)	354	WP_009847607.1	50S ribosomal protein L19	-
OCV49_RS02555	yacG	504744..504941 (-)	198	WP_017056605.1	DNA gyrase inhibitor YacG	-
OCV49_RS02560	zapD	505023..505763 (-)	741	WP_017108712.1	cell division protein ZapD	-
OCV49_RS02565	coaE	505790..506404 (-)	615	WP_192852304.1	dephospho-CoA kinase	-
OCV49_RS02570	pilD	506407..507276 (-)	870	WP_192852303.1	A24 family peptidase	Machinery gene
OCV49_RS02575	pilC	507345..508574 (-)	1230	WP_102267283.1	type II secretion system F family protein	Machinery gene
OCV49_RS02580	pilB	508589..510274 (-)	1686	WP_192852302.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OCV49_RS02585	pilA	510275..510685 (-)	411	WP_192852301.1	pilin	Machinery gene
OCV49_RS02590	nadC	510940..511830 (-)	891	WP_017079961.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32584.73 Da
• Isoelectric Point: 6.9289

>NTDB_id=92183 OCV49_RS02570 WP_192852303.1 506407..507276(-) (pilD) [Vibrio lentus strain LMG 21034]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCPKCETQLRII
DNIPVLSWLFLKGKCHSCANPISARYPLVELLTAILCTVVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNVSPVSLQDSVIGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLLWGNDIMSWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=92183 OCV49_RS02570 WP_192852303.1 506407..507276(-) (pilD) [Vibrio lentus strain LMG 21034]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTTCTTATCGGCAGTTTTCTCAA
CGTCGTCATACACCGTTTACCGATTATGATGGAACGAGAATGGCAACAAGAGTGCTCGGAATATTTCTCTCAATACAAAA
TCCCGGCACCTGAAGGGAAGTTTAACCTAAGCATTCCTCGTTCGACTTGTCCGAAATGTGAAACCCAATTAAGAATCATC
GACAATATCCCAGTATTGAGCTGGTTGTTCTTAAAGGGTAAATGTCACAGTTGTGCGAATCCAATCAGTGCTCGCTACCC
TTTGGTTGAACTGCTTACTGCAATCCTTTGTACCGTAGTCGCTAGCCATTTTGGTTTCAGTTACTACGCTATCGCCCTGA
TCTTTTTCACATTTGCATTAATTACCGCAACCTTTATCGATCTCGATACCATGCTGCTGCCTGATCAAATTACCTTACCT
TTAGTTTGGTCTGGTATCGCTCTCGCTCTGTTTAACGTCAGTCCGGTATCGCTTCAAGATTCTGTGATTGGCGCAATGGC
AGGCTACCTAGCCTTGTGGTCGGTTTATTGGCTGTTCAAGCTTCTAACAGGCAAAGAAGGCATGGGTTACGGTGATTTCA
AACTTCTGGCTGCGCTTGGTGCATGGCTTGGCTGGCAACACCTACCAATGATCATCCTTTTATCGTCGCTGGTCGGTTTG
GTTTTCGGCTTGATTCAACTTCGCTTGAAACAACAAGGCATAGATAAAGCCTTCCCATTTGGCCCATACCTAGCGATTGC
TGGTTGGGTAAGCCTATTGTGGGGCAATGACATCATGAGTTGGTATTTCACTTCTGTTTTAGGGATTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	74.394	100	0.744
pilD	Vibrio cholerae strain A1552	69.792	99.654	0.696
pilD	Acinetobacter nosocomialis M2	51.311	92.388	0.474
pilD	Acinetobacter baumannii D1279779	50.936	92.388	0.471
pilD	Neisseria gonorrhoeae MS11	46.377	95.502	0.443