Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OCV49_RS02575 Genome accession   NZ_AP025499
Coordinates   507345..508574 (-) Length   409 a.a.
NCBI ID   WP_102267283.1    Uniprot ID   -
Organism   Vibrio lentus strain LMG 21034     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 502345..513574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV49_RS02540 rimM 502545..503099 (+) 555 WP_009847609.1 ribosome maturation factor RimM -
  OCV49_RS02545 trmD 503126..503866 (+) 741 WP_009847608.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  OCV49_RS02550 rplS 503926..504279 (+) 354 WP_009847607.1 50S ribosomal protein L19 -
  OCV49_RS02555 yacG 504744..504941 (-) 198 WP_017056605.1 DNA gyrase inhibitor YacG -
  OCV49_RS02560 zapD 505023..505763 (-) 741 WP_017108712.1 cell division protein ZapD -
  OCV49_RS02565 coaE 505790..506404 (-) 615 WP_192852304.1 dephospho-CoA kinase -
  OCV49_RS02570 pilD 506407..507276 (-) 870 WP_192852303.1 A24 family peptidase Machinery gene
  OCV49_RS02575 pilC 507345..508574 (-) 1230 WP_102267283.1 type II secretion system F family protein Machinery gene
  OCV49_RS02580 pilB 508589..510274 (-) 1686 WP_192852302.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OCV49_RS02585 pilA 510275..510685 (-) 411 WP_192852301.1 pilin Machinery gene
  OCV49_RS02590 nadC 510940..511830 (-) 891 WP_017079961.1 carboxylating nicotinate-nucleotide diphosphorylase -
  OCV49_RS02595 ampD 511914..512513 (+) 600 WP_192852300.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45393.35 Da        Isoelectric Point: 10.2353

>NTDB_id=92184 OCV49_RS02575 WP_102267283.1 507345..508574(-) (pilC) [Vibrio lentus strain LMG 21034]
MSSKNKQSQLKNYHWKGINSSGKKVSGQTLALTELEVREKLKDQHIQIKKIKKKSISALTRLTHRVKAKDITVLTRQLAT
MLATGVPIVQAIKLVSDNHRKAEMKSILSHICKGVEAGTPISKAMRTASRHFDELYTDLVATGELSGNLAQVFERLATYR
EKSEQLKSKVIKALIYPAMVVAVALTVSYLMLTMVIPEFESMFSGFGADLPWFTQQVLYLSHWMQAYSFYTAIGIGLLFL
SIQQLRQRSYSIRLSTSRLGLRFPILGAVITKASIAKFSRTLSTSFSSGIPILTSLKTTAKTAGNLHYESAIIEVHRETA
AGMPMYIAMRNTNAFPEMVLQMVMIGEESGNLDDMLNKVASIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLP
IFNLMSVLG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=92184 OCV49_RS02575 WP_102267283.1 507345..508574(-) (pilC) [Vibrio lentus strain LMG 21034]
ATGAGTAGTAAAAACAAACAATCACAACTAAAAAACTACCATTGGAAGGGAATAAACAGCTCCGGAAAGAAAGTATCAGG
GCAGACCTTAGCATTGACGGAATTAGAGGTACGAGAAAAGCTCAAAGACCAGCATATCCAAATAAAGAAAATCAAAAAGA
AGAGCATTTCAGCACTGACTCGTTTAACGCACCGAGTTAAGGCCAAAGACATTACCGTGTTAACTCGGCAACTCGCGACC
ATGTTGGCAACGGGTGTTCCTATCGTGCAGGCCATCAAGTTAGTATCAGACAACCATCGTAAAGCTGAGATGAAATCTAT
CTTGTCGCACATCTGTAAAGGCGTGGAAGCAGGTACTCCGATTTCAAAAGCCATGCGCACCGCAAGCCGTCACTTTGATG
AACTGTATACCGACTTAGTTGCGACGGGAGAACTCTCAGGTAACCTAGCGCAAGTGTTTGAACGTTTAGCGACATACCGT
GAAAAGAGTGAGCAACTAAAGTCTAAGGTTATAAAGGCTCTCATCTACCCAGCAATGGTTGTTGCGGTCGCCCTTACCGT
TTCCTATTTAATGCTGACCATGGTCATTCCTGAGTTTGAATCGATGTTTTCTGGTTTCGGAGCAGACTTACCTTGGTTCA
CTCAGCAAGTGCTTTATCTTTCCCACTGGATGCAGGCCTACAGTTTCTATACTGCTATCGGTATTGGTTTATTATTCCTA
TCCATTCAGCAACTGCGTCAGCGATCTTATTCAATTCGACTTTCAACCAGTCGTCTTGGTTTACGCTTTCCTATCTTGGG
TGCTGTCATCACTAAGGCATCAATTGCAAAGTTCAGCCGGACGCTCTCAACCAGTTTTAGTTCTGGGATTCCCATCTTAA
CGAGCCTAAAAACCACAGCGAAAACGGCGGGTAATCTGCATTATGAATCGGCAATCATCGAGGTTCACCGTGAGACTGCC
GCAGGCATGCCGATGTACATTGCAATGCGCAATACCAATGCCTTTCCGGAGATGGTTTTGCAGATGGTAATGATTGGAGA
AGAGTCAGGAAACCTCGATGATATGCTCAATAAAGTCGCTTCCATTTACGAGTTTGAAGTAGACAACACCGTCGATAATC
TAGGTAAAATTCTCGAACCACTGATTATTGTCTTTTTGGGTACCGTTGTTGGTGGCCTTGTTGTCGCGATGTACTTACCG
ATCTTTAATCTTATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

81

97.8

0.792
  pilC Vibrio campbellii strain DS40M4

73.892

99.267

0.734
  pilC Acinetobacter baylyi ADP1

41.809

100

0.418
  pilC Acinetobacter baumannii D1279779

41.975

99.022

0.416
  pilC Legionella pneumophila strain ERS1305867

42.105

97.555

0.411
  pilG Neisseria gonorrhoeae MS11

40.852

97.555

0.399
  pilG Neisseria meningitidis 44/76-A

40.602

97.555

0.396
  pilC Pseudomonas stutzeri DSM 10701

40.099

98.778

0.396

Multiple sequence alignment