Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   OCV24_RS01285 Genome accession   NZ_AP025497
Coordinates   286783..288474 (+) Length   563 a.a.
NCBI ID   WP_208806551.1    Uniprot ID   -
Organism   Vibrio kanaloae strain LMG 20539     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 281783..293474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV24_RS01265 pilM 284006..285031 (+) 1026 WP_150878778.1 type IV pilus assembly protein PilM Machinery gene
  OCV24_RS01270 pilN 285015..285614 (+) 600 WP_136997910.1 PilN domain-containing protein Machinery gene
  OCV24_RS01275 pilO 285607..286218 (+) 612 WP_060468742.1 type 4a pilus biogenesis protein PilO Machinery gene
  OCV24_RS01280 pilP 286205..286723 (+) 519 WP_146450308.1 pilus assembly protein PilP Machinery gene
  OCV24_RS01285 pilQ 286783..288474 (+) 1692 WP_208806551.1 type IV pilus secretin PilQ Machinery gene
  OCV24_RS01290 aroK 288651..289169 (+) 519 WP_017061125.1 shikimate kinase AroK -
  OCV24_RS01295 aroB 289195..290283 (+) 1089 WP_077680945.1 3-dehydroquinate synthase -
  OCV24_RS01300 - 290363..291868 (+) 1506 WP_136997907.1 SPOR domain-containing protein -
  OCV24_RS01305 - 291938..292783 (+) 846 WP_017055828.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 61343.95 Da        Isoelectric Point: 4.4300

>NTDB_id=92132 OCV24_RS01285 WP_208806551.1 286783..288474(+) (pilQ) [Vibrio kanaloae strain LMG 20539]
MNKGLQGLIVSVMLIFSVLSHAEDLPNKLENIDFRVNKNKDAVLIIELATSTVVVDVQRAQEGLSIELINTHVDDNKLQL
LDVKDFATLVEGVEVYKEAPSTRLLATISKDYQYEYNLKGRFIEVVISKPALEEAITEKSILEKEGKLISINFQDIPVRN
VLQLIADYNDFNLVVSDSVTGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKDELDLREQQALEKSRLEEELG
ELKSEIIKIHFAKATDIADMIGGDGTVSMLSDRGSITIDERTNSLLIRELEENIAVIRSIIESLDIPVKQVQIEARIVTV
TEGNLDELGVRWGASSTNGSFTVGGSIEGNYPSIAPYDSNGGNSVIDEYLNVNLGATSSNASSIAFQVAKLGSDTLLDLE
LSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPG
QVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSTVDKVPLLGDLPVLGALFRRSYENVGKSELLIFVTPKV
VIQ

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=92132 OCV24_RS01285 WP_208806551.1 286783..288474(+) (pilQ) [Vibrio kanaloae strain LMG 20539]
ATGAACAAAGGGTTACAAGGCTTGATTGTGTCTGTGATGTTGATCTTTAGTGTGCTCAGTCACGCTGAGGACTTACCTAA
TAAGTTAGAGAATATTGATTTTAGGGTGAACAAAAATAAAGACGCTGTCCTAATTATCGAACTCGCAACCAGCACGGTTG
TGGTGGATGTTCAACGTGCGCAAGAGGGGCTAAGCATAGAGCTGATCAATACTCATGTTGATGACAACAAACTCCAGCTT
CTTGATGTGAAAGATTTCGCTACCTTGGTTGAAGGCGTGGAAGTGTATAAAGAGGCCCCAAGCACTCGGTTGTTAGCGAC
AATCAGCAAGGATTACCAATACGAATACAATCTCAAAGGCCGTTTTATTGAGGTGGTGATCAGTAAGCCTGCTCTAGAAG
AAGCGATAACAGAGAAAAGTATACTCGAGAAAGAGGGTAAGCTGATATCGATTAACTTCCAAGATATTCCAGTGCGAAAT
GTCCTGCAGCTTATCGCTGACTATAACGACTTTAACTTAGTCGTGTCTGATTCAGTAACCGGAAACCTAACTTTACGTTT
AGATGGTGTGCCTTGGCAGCAAGTTCTAGATATCATCTTACAGGTCAAAGGGTTAGATAAGCGGGTAGATGGCAATGTCA
TCTTGGTGGCGCCAAAAGATGAACTAGACCTTCGAGAGCAGCAAGCGTTAGAGAAGTCGCGTTTAGAAGAGGAATTGGGT
GAGCTTAAGTCGGAAATCATTAAGATTCACTTTGCTAAAGCGACCGACATTGCCGACATGATTGGTGGTGATGGGACGGT
GAGCATGTTGTCCGATCGTGGTTCGATTACTATTGATGAGCGCACCAATTCATTGCTTATTCGTGAACTGGAGGAAAACA
TTGCCGTGATACGAAGCATTATTGAATCTTTAGATATCCCTGTGAAGCAAGTTCAGATAGAGGCGCGTATTGTGACTGTT
ACTGAGGGGAACCTTGATGAACTAGGAGTGCGTTGGGGAGCATCTTCAACAAACGGAAGCTTCACGGTTGGTGGTTCTAT
CGAAGGTAACTACCCGTCTATTGCACCTTACGATAGTAATGGAGGGAATAGCGTCATTGATGAGTACCTCAACGTTAATT
TAGGTGCGACATCTTCAAATGCTTCGAGTATCGCATTTCAGGTTGCTAAACTGGGCTCTGATACTCTGCTCGACCTTGAG
TTATCAGCGTTACAACAAGAGTCAAAAGCTGAAATTATTTCGAGTCCACGTTTGATTACTACCAATAAAAAGCCCGCTTA
TATTGAGCAAGGTACTGAAATTCCTTATTTAGAGTCATCTTCAAGTGGTGCAACGTCAGTCGCATTTAAGAAAGCGGTAT
TGAGCCTTAAGGTGACGCCGCAGATCACGCCAGACAATCGTTTGGTGTTGGATTTGAGCGTAACTCAAGATAGGCCCGGA
CAGGTGGTGAAAACCGGAACTGGAGAGGCTGTTGCAATTGATACCCAGCGTATTGGCACGCAAGTGCTTGTTAATAATGG
TGAAACAGTTGTTCTTGGTGGGATATTTCAGCACAGTGTGAGTAGCACCGTCGATAAAGTTCCTCTATTGGGAGACCTGC
CTGTATTAGGGGCTTTGTTCCGCAGAAGCTACGAAAATGTAGGGAAAAGTGAGTTGTTGATCTTTGTTACACCGAAAGTT
GTGATTCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(245-310)

Bacterial type II and III secretion system protein (Secretin)

(403-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

78.938

96.98

0.766
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

78.938

96.98

0.766
  pilQ Vibrio campbellii strain DS40M4

79.19

96.448

0.764
  pilQ Legionella pneumophila strain ERS1305867

42.308

96.98

0.41
  pilQ Legionella pneumophila strain Lp02

42.308

96.98

0.41
  pilQ Pseudomonas aeruginosa PAK

41.091

97.691

0.401
  comQ Acinetobacter baylyi ADP1

39.464

99.467

0.393
  pilQ Acinetobacter baumannii D1279779

37.197

100

0.382
  pilQ Acinetobacter baumannii strain A118

37.197

100

0.382

Multiple sequence alignment