Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | OCV24_RS01280 | Genome accession | NZ_AP025497 |
| Coordinates | 286205..286723 (+) | Length | 172 a.a. |
| NCBI ID | WP_146450308.1 | Uniprot ID | - |
| Organism | Vibrio kanaloae strain LMG 20539 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 281205..291723
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCV24_RS01260 | - | 281293..283854 (-) | 2562 | WP_167514273.1 | penicillin-binding protein 1A | - |
| OCV24_RS01265 | pilM | 284006..285031 (+) | 1026 | WP_150878778.1 | type IV pilus assembly protein PilM | Machinery gene |
| OCV24_RS01270 | pilN | 285015..285614 (+) | 600 | WP_136997910.1 | PilN domain-containing protein | Machinery gene |
| OCV24_RS01275 | pilO | 285607..286218 (+) | 612 | WP_060468742.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| OCV24_RS01280 | pilP | 286205..286723 (+) | 519 | WP_146450308.1 | pilus assembly protein PilP | Machinery gene |
| OCV24_RS01285 | pilQ | 286783..288474 (+) | 1692 | WP_208806551.1 | type IV pilus secretin PilQ | Machinery gene |
| OCV24_RS01290 | aroK | 288651..289169 (+) | 519 | WP_017061125.1 | shikimate kinase AroK | - |
| OCV24_RS01295 | aroB | 289195..290283 (+) | 1089 | WP_077680945.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 19067.41 Da Isoelectric Point: 10.8137
>NTDB_id=92131 OCV24_RS01280 WP_146450308.1 286205..286723(+) (pilP) [Vibrio kanaloae strain LMG 20539]
MKPNRVFCSTLLLLLLVGCKANEDSLEGFVVQVEAKAKKEVEQLVPAAEFTAATYQRRAFRPPFELPKEAIVQNQPLIKK
NCWQPSARSRNGKLEKYPLSKLRLRGVMGSGSSVFGLVQTPKGSVVNVKKGQFIGLNNGRVTKVTSQHVLINETLPDGLG
CWHKRNVKLALK
MKPNRVFCSTLLLLLLVGCKANEDSLEGFVVQVEAKAKKEVEQLVPAAEFTAATYQRRAFRPPFELPKEAIVQNQPLIKK
NCWQPSARSRNGKLEKYPLSKLRLRGVMGSGSSVFGLVQTPKGSVVNVKKGQFIGLNNGRVTKVTSQHVLINETLPDGLG
CWHKRNVKLALK
Nucleotide
Download Length: 519 bp
>NTDB_id=92131 OCV24_RS01280 WP_146450308.1 286205..286723(+) (pilP) [Vibrio kanaloae strain LMG 20539]
ATGAAACCCAATAGAGTGTTCTGTTCAACCTTACTACTGCTTTTGCTTGTGGGCTGTAAAGCGAATGAAGATTCGTTAGA
AGGTTTTGTGGTGCAAGTCGAAGCCAAGGCCAAGAAAGAGGTGGAACAGCTTGTTCCTGCCGCTGAGTTTACGGCTGCTA
CTTATCAACGTCGAGCTTTTCGTCCTCCGTTTGAACTTCCTAAGGAAGCCATTGTGCAGAATCAGCCTCTAATTAAGAAA
AATTGTTGGCAACCTAGTGCTCGCTCTCGGAATGGCAAGCTAGAGAAATACCCGCTGAGTAAGCTTCGTTTAAGAGGCGT
GATGGGAAGTGGCTCAAGCGTGTTTGGATTAGTGCAAACACCCAAAGGGAGTGTGGTTAACGTGAAAAAAGGCCAGTTTA
TCGGTTTAAATAACGGTCGTGTTACTAAAGTAACGAGCCAGCACGTTCTGATTAATGAAACTCTTCCAGATGGCTTAGGT
TGTTGGCACAAGCGCAACGTTAAGCTGGCTCTGAAGTAA
ATGAAACCCAATAGAGTGTTCTGTTCAACCTTACTACTGCTTTTGCTTGTGGGCTGTAAAGCGAATGAAGATTCGTTAGA
AGGTTTTGTGGTGCAAGTCGAAGCCAAGGCCAAGAAAGAGGTGGAACAGCTTGTTCCTGCCGCTGAGTTTACGGCTGCTA
CTTATCAACGTCGAGCTTTTCGTCCTCCGTTTGAACTTCCTAAGGAAGCCATTGTGCAGAATCAGCCTCTAATTAAGAAA
AATTGTTGGCAACCTAGTGCTCGCTCTCGGAATGGCAAGCTAGAGAAATACCCGCTGAGTAAGCTTCGTTTAAGAGGCGT
GATGGGAAGTGGCTCAAGCGTGTTTGGATTAGTGCAAACACCCAAAGGGAGTGTGGTTAACGTGAAAAAAGGCCAGTTTA
TCGGTTTAAATAACGGTCGTGTTACTAAAGTAACGAGCCAGCACGTTCTGATTAATGAAACTCTTCCAGATGGCTTAGGT
TGTTGGCACAAGCGCAACGTTAAGCTGGCTCTGAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio cholerae strain A1552 |
64.375 |
93.023 |
0.599 |
| pilP | Vibrio campbellii strain DS40M4 |
52.663 |
98.256 |
0.517 |