Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   VOI49_RS00840 Genome accession   NZ_CP142018
Coordinates   130993..131388 (+) Length   131 a.a.
NCBI ID   WP_226313530.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain lu24     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 125993..136388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOI49_RS00810 proC 126359..127135 (-) 777 WP_115246875.1 pyrroline-5-carboxylate reductase -
  VOI49_RS00815 pepA 127182..128249 (-) 1068 WP_003049281.1 glutamyl aminopeptidase -
  VOI49_RS00820 - 128808..129092 (+) 285 WP_277997749.1 DUF4651 domain-containing protein -
  VOI49_RS00825 - 129089..129406 (+) 318 WP_226313532.1 thioredoxin family protein -
  VOI49_RS00830 ytpR 129425..130051 (+) 627 WP_115246865.1 YtpR family tRNA-binding protein -
  VOI49_RS00835 - 130191..130919 (-) 729 WP_226313531.1 class I SAM-dependent methyltransferase -
  VOI49_RS00840 ssbA 130993..131388 (+) 396 WP_226313530.1 single-stranded DNA-binding protein Machinery gene
  VOI49_RS00845 - 131898..132860 (+) 963 WP_003049297.1 ABC transporter substrate-binding protein -
  VOI49_RS00850 - 132890..133849 (+) 960 WP_226316715.1 ABC transporter substrate-binding protein -
  VOI49_RS00855 - 133890..134774 (+) 885 WP_324739070.1 ABC transporter permease subunit -
  VOI49_RS00860 - 134867..136096 (-) 1230 WP_226313527.1 IS110 family transposase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14830.10 Da        Isoelectric Point: 8.0157

>NTDB_id=920998 VOI49_RS00840 WP_226313530.1 130993..131388(+) (ssbA) [Streptococcus dysgalactiae strain lu24]
MYNKVIMIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVANDLVDLVLEEEVLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=920998 VOI49_RS00840 WP_226313530.1 130993..131388(+) (ssbA) [Streptococcus dysgalactiae strain lu24]
ATGTATAATAAAGTGATTATGATTGGTCGTTTGGTGGCTAAACCAGAATTGGTAAAAACAGCTACCGATAAGCATGTAGC
ACGTCTCTCTTTGGCTGTTAATCGAAGATTTAAAAATGCTTCAGGAGAGCGAGAAGCAGATTTTATCTCTGTTGTTGTTT
GGGGAAAGTTAGCAGAAACCTTAGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGACGGTGAACTTAGAACCCGC
AAATATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTGCTATGCCAGTCTTTTCAGTTATTAGAAAGTCGTGCTCA
GCGTGCGATGCGAGAAAATAATGTCGCCAATGACTTGGTAGATCTGGTTCTAGAAGAGGAGGTGTTGCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

74.046

100

0.74
  ssbB/cilA Streptococcus pneumoniae D39

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae R6

71.756

100

0.718
  ssbB/cilA Streptococcus mitis NCTC 12261

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae Rx1

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.992

100

0.71
  ssbB/cilA Streptococcus mitis SK321

70.229

100

0.702
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

46.154

89.313

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397