Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OCV39_RS14280 Genome accession   NZ_AP025472
Coordinates   3068510..3069610 (-) Length   366 a.a.
NCBI ID   WP_261888664.1    Uniprot ID   -
Organism   Vibrio cortegadensis strain CECT 7227     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3063510..3074610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV39_RS14250 hemF 3064042..3064959 (-) 918 WP_017052843.1 oxygen-dependent coproporphyrinogen oxidase -
  OCV39_RS14255 - 3064968..3065525 (-) 558 WP_029203399.1 L-threonylcarbamoyladenylate synthase -
  OCV39_RS14260 purE 3065731..3066216 (+) 486 WP_017052845.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OCV39_RS14265 - 3066221..3067351 (+) 1131 WP_261888663.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OCV39_RS14270 - 3067437..3068009 (-) 573 WP_017052847.1 type I DNA topoisomerase -
  OCV39_RS14275 - 3068031..3068507 (-) 477 WP_290270012.1 DUF494 family protein -
  OCV39_RS14280 dprA 3068510..3069610 (-) 1101 WP_261888664.1 DNA-processing protein DprA Machinery gene
  OCV39_RS14285 - 3069607..3070716 (-) 1110 WP_113798163.1 LysM peptidoglycan-binding domain-containing protein -
  OCV39_RS14290 def 3070857..3071369 (+) 513 WP_017052851.1 peptide deformylase -
  OCV39_RS14295 fmt 3071386..3072333 (+) 948 WP_261888665.1 methionyl-tRNA formyltransferase -
  OCV39_RS14300 rsmB 3072402..3073685 (+) 1284 WP_261888666.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 40281.26 Da        Isoelectric Point: 6.9309

>NTDB_id=91848 OCV39_RS14280 WP_261888664.1 3068510..3069610(-) (dprA) [Vibrio cortegadensis strain CECT 7227]
MTEQELEAWLMLSFTPYLGEKRLSRLRSIDSLVNIVQYKPQNLQAIGFKTKQIEYLKHKALSDVEPCLKWAQQKNHHIIT
PLDIHYPPLLKEIPSHPPVLFVKGNSSCLGDPQIAMVGSRNASLEGRQTAKSFAKEFSNQGLIVTSGLALGIDGYAHDGA
LEGSGETVAVLGSGLDNIYPARHRKLAERIIDKGALVSEFRPSAKPRPENFPRRNRIISGLSVGVLVVEAAEKSGSLITA
RYANEQGRDVFAMPGSIHNPNSRGGNSLIKAGACLVQSAQDVLSEIETLVNWSIDHQPNLFDMVEEEEELLFPLLLANVG
IEVTPVDILAQRTHIPVHEVMMQLLELELSGHVVAVTGGYIRKRRG

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=91848 OCV39_RS14280 WP_261888664.1 3068510..3069610(-) (dprA) [Vibrio cortegadensis strain CECT 7227]
GTGACGGAGCAAGAACTCGAAGCGTGGTTGATGTTGAGCTTCACTCCCTATTTGGGAGAAAAGAGATTATCCAGATTAAG
AAGTATCGATTCACTGGTTAACATTGTTCAATATAAGCCTCAAAACCTTCAGGCAATAGGGTTCAAAACAAAACAGATAG
AGTACTTAAAACACAAAGCTCTTTCAGATGTTGAGCCTTGCTTAAAATGGGCTCAGCAAAAAAATCATCATATTATTACT
CCTCTCGATATACATTACCCACCGCTTTTAAAAGAGATCCCCTCCCATCCGCCGGTATTATTTGTAAAAGGTAACTCTAG
TTGCTTGGGGGATCCTCAAATCGCAATGGTTGGCAGTCGAAATGCAAGCTTGGAAGGGCGACAAACCGCGAAGTCGTTTG
CGAAAGAGTTTTCTAATCAAGGCTTAATCGTAACTAGCGGGCTTGCATTGGGGATCGATGGTTACGCTCATGATGGAGCG
TTAGAAGGAAGTGGTGAAACGGTGGCTGTACTTGGCTCTGGTCTTGATAATATTTATCCAGCTCGCCATAGGAAGTTGGC
TGAAAGAATTATCGATAAAGGGGCGTTAGTTTCAGAATTTCGTCCTAGTGCCAAGCCGAGGCCTGAAAACTTCCCACGGC
GTAATCGAATTATTAGTGGCTTGTCTGTTGGGGTCTTAGTCGTTGAGGCGGCAGAGAAAAGTGGTTCTCTTATTACGGCT
CGTTACGCAAACGAGCAAGGGCGTGATGTTTTTGCTATGCCGGGCTCTATCCATAACCCCAATAGTCGTGGCGGAAATAG
CTTAATTAAAGCGGGAGCGTGTTTAGTCCAAAGTGCGCAAGATGTTCTCTCTGAAATAGAAACTCTGGTAAACTGGTCTA
TAGATCATCAGCCAAATTTATTCGACATGGTGGAAGAAGAGGAAGAATTGCTATTTCCTCTTCTGTTAGCTAACGTAGGA
ATAGAGGTGACTCCTGTTGATATTTTGGCACAGCGGACCCATATACCTGTGCATGAGGTCATGATGCAGCTTTTGGAGCT
TGAGCTCTCAGGGCATGTTGTTGCAGTAACCGGTGGCTATATTCGAAAGAGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(315-359)

DNA recombination-mediator protein A (DNA_processg_A)

(71-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

63.514

100

0.642
  dprA Vibrio cholerae strain A1552

58.76

100

0.596
  dprA Glaesserella parasuis strain SC1401

47.139

100

0.473
  dprA Legionella pneumophila strain ERS1305867

44.199

98.907

0.437
  dprA Neisseria meningitidis strain C311

37.879

100

0.41
  dprA Neisseria meningitidis MC58

37.879

100

0.41
  dprA Neisseria gonorrhoeae strain FA1090

37.817

100

0.407
  dprA Neisseria gonorrhoeae MS11

37.563

100

0.404
  dprA Haemophilus influenzae Rd KW20

48.822

81.148

0.396
  dprA Acinetobacter baylyi ADP1

39.296

93.169

0.366
  dprA Acinetobacter baumannii strain A118

40.673

89.344

0.363

Multiple sequence alignment